Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00746 ATGGAAGGAGCTTCATCTTCCTCTACAACACCGGACGATCATGTTTTAGTAGATGATTTCAACTTGTTACCCCTTCATGATCAAGATGGTGAAAATTTCCACATATCTGATGAGAAATATGCTGAGGAATTACAGTTACAAGAAGCACTATATTTCTCTCGTATTTCAAATAGTAGTGTAACAGTAGAAGAAGAAGAAGGTGAATCATCTTCTTGTTCTAAATTGAAAGCATCCGATTGTGGTATCTGTATGGAAGTTAAACCGGTTGAAAAAGTGTTCGAAAACCCTAACTGTTCACACTCTTTCTGTGTAGACTGTGTTGGGAAATTTCTAGCTGTAAAAATTCAGGAGAATAGATCAACTGTAAAATGTCCTTATCCAAAATGCAATGGTATTTGGGAGCCTCATGATTGTAGTTCATTTATACCAAAGGATTTGCTTGATAGATGGGAAAATGCAGTTTGTGAGGATACCGTGTTGAGTTCGGAGAAATTCTACTGTCCTTTTAAGGATTGTTCAGCTATGTTGGTGAACGATGAAAAGGAAGCAGTTGTGACTAGTTCGGAATGTCCGCATTGTCATAGATTATTCTGTGCTCAATGTAAGGTTACATGGCACGCGGGTGTTGATTGTAAAGAGTTTCAAAGCTTGAAAGACGGGGAGCGAGGGAGGGAAGATATCTTGGCCATGGAGCTTGCTAAGAACAAGAAATGGAAAAGATGTCCAAAATGCAGCTTCTATGTTGAAAGAGTTGTGGGATGCACTCGCATTACATGCAGGTGTGGTAATCAATTTTGCTATGGCTGTGGATCTACTTGGAATGAAGACACTCATTATCATTGTGCAACTCAATAA 855 0.3895 MEGASSSSTTPDDHVLVDDFNLLPLHDQDGENFHISDEKYAEELQLQEALYFSRISNSSVTVEEEEGESSSCSKLKASDCGICMEVKPVEKVFENPNCSHSFCVDCVGKFLAVKIQENRSTVKCPYPKCNGIWEPHDCSSFIPKDLLDRWENAVCEDTVLSSEKFYCPFKDCSAMLVNDEKEAVVTSSECPHCHRLFCAQCKVTWHAGVDCKEFQSLKDGERGREDILAMELAKNKKWKRCPKCSFYVERVVGCTRITCRCGNQFCYGCGSTWNEDTHYHCATQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00746 284 Pfam IBR domain, a half RING-finger domain 231 276 IPR002867 GO:0008270
Vifa6g00746 284 Pfam IBR domain, a half RING-finger domain 149 211 IPR002867 GO:0008270
Vifa6g00746 284 CDD Rcat_RBR_unk 237 273 - -
Vifa6g00746 284 ProSiteProfiles Zinc finger RING-type profile. 80 128 IPR001841 -
Vifa6g00746 284 SUPERFAMILY RING/U-box 222 282 - -
Vifa6g00746 284 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 273 IPR031127 GO:0004842|GO:0016567
Vifa6g00746 284 ProSiteProfiles TRIAD supradomain profile. 76 284 IPR044066 -
Vifa6g00746 284 ProSitePatterns Zinc finger RING-type signature. 98 107 IPR017907 -
Vifa6g00746 284 CDD BRcat_RBR_unk 161 214 - -
Vifa6g00746 284 Gene3D - 165 212 - -
Vifa6g00746 284 SUPERFAMILY RING/U-box 159 215 - -
Vifa6g00746 284 SUPERFAMILY RING/U-box 78 157 - -
Vifa6g00746 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 162 IPR013083 -
Vifa6g00746 284 SMART ibrneu5 148 211 IPR002867 GO:0008270
Vifa6g00746 284 SMART ibrneu5 221 281 IPR002867 GO:0008270
Vifa6g00746 284 Gene3D - 213 284 - -
Vifa6g00746 284 FunFam RBR-type E3 ubiquitin transferase 75 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00746 Vifa-Chr6 265550286 265551317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00746 80 271 C3H Transcription Factor Family AT2G19610 29.703 3.39e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00746 K11975 - gmx:100815626 344.354