Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00745 ATGGAAAGTGAGAAAGTGAACGCTATAATTGACCTAGTCAATGAGATTTCTAACATCTCTGACTTCAGGCCTATGGTGAAGAAACAGTATTGCAATTTAGCTCGAAGGTTGAAGCTTTTGATCCCTTTGTTCGAGGAGATTCGGGATATGCATGATTCAATCCCGGATTACACTTCAAAAGCTGTGGTTTTGTTTAAACAAGCTCTTGAATCAGCTAGGGAGCTTCTCAGATTTGGAAGTGAAGGAAGCAAGATTTACATGGTCCTTGAGAGAGACCAGATTATGAAAAAATTCTATGACGTGACAGCTCGGTTGGAACAATCACTGGATGCAATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAACTAGTTCTTGCTCAGTTTCGAAGAGCAAAAGGGAGAGTTGATGAACCAGATATCAAGTTGTATGAAGATATGTCATACCTTTACAACAATAGCAGTGACGTAGCTACAGATTCAGCTGTTCTAAGTCGATTAGCAGACAAATTGCAATTGATGGGAATAGCCGATCTTACACAAGAATCACTCGCTTTGCATGAGATGGTAGCAGTAAGCAGTGGGGATCCAGGGGCCCGCATTGAGAAAATGTCAATGTTACTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACCTAGTCAAGGATGATACTAAAATAGCAAAGGGCGTTTCTTCCGGATTTCAAGGACTGCGGAAAAATGATATGAATCATCAGGCCACTGTTATCCCAAGTGATTTTAAATGTCCGATTTCCTTGGAATTGATGATTGATCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGTTCCTGTATTGAGAAGTGGTTGCAAGACGGGCACATGACATGCCCAAAAACACAGCAGTCTCTCATCAGTGCTGTTCTCACTCCCAACTACGTCTTACGAAGCCTGATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCTGAGGCAAGTAAATCAGCATCAGCCTGCACCCCAGCTGAGCGAAGTAAGATTGAAAATCTAATCCAAAAGCTCATTTCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGCGAGGTTCGCCTTCTTGCAAAACGCAATGCAGATAATCGTGTAGCTATTGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTCCTCTCCGTGCCCGACTCCCGAACTCAAGAGCATGCTGTGACAGCGCTTTTGAATCTCTCCATATACGAGAGTAACAAAGGAAGCATTGTCTCTTCAGGAGCAGTTCCAGGCATAGTTCATGTGCTGAAGAGGGGAAGCATGGAAGCTCGGGAAAACGCGGCTGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCCATAACACCACTGGTGACACTGCTGAGTGAAGGTACCCCAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAAGGAAACAAGGGAAAGGCGGTGAGGGCTGGTGTTATTCCCACGCTGATGCGACTTCTGACAGAACCTAGCGGAGGAATGGTGGATGAAGCATTGGCCATTTTGGCAATTTTGTCTAGTCATCCTGAAGGGAAGTCTGCCATTGGTGCTGCAGAGGCAGTGCCAGTGTTGGTAGAGTTTATTGGGACCGGATCCCCAAGGAACAAAGAGAACGCAGCTGCGGTGTTAGTTCACCTTTGTTCTGGTGATCGACAGTATATAGCGCAGGCAGAGGAGCTGGGGGTGATGGCTCCGTTGTTGGAATTGGCTCAAAATGGTACTGACAGAGGCAAAAGAAAGGCAGCACAATTGATAGAGCGTATGAGCAGGATCCGTGAGCAAGAACAGCTTGAAGTTCAGATACAAGCTGAACTTGTACCTCAGAATGACGATATCCAACCACCACCTTTGATCATTAACCTTGATATTGACACGTGA 1992 0.4483 MESEKVNAIIDLVNEISNISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMHDSIPDYTSKAVVLFKQALESARELLRFGSEGSKIYMVLERDQIMKKFYDVTARLEQSLDAISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDIKLYEDMSYLYNNSSDVATDSAVLSRLADKLQLMGIADLTQESLALHEMVAVSSGDPGARIEKMSMLLKKIKDHVQIENLVKDDTKIAKGVSSGFQGLRKNDMNHQATVIPSDFKCPISLELMIDPVIVSTGQTYERSCIEKWLQDGHMTCPKTQQSLISAVLTPNYVLRSLIEQWCEANGIEPPKRPSTSEASKSASACTPAERSKIENLIQKLISGSPEDQRSAAGEVRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGSIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAITPLVTLLSEGTPRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILSSHPEGKSAIGAAEAVPVLVEFIGTGSPRNKENAAAVLVHLCSGDRQYIAQAEELGVMAPLLELAQNGTDRGKRKAAQLIERMSRIREQEQLEVQIQAELVPQNDDIQPPPLIINLDIDT 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00745 663 Gene3D - 334 489 IPR011989 -
Vifa6g00745 663 CDD MLKL_NTD 6 135 - -
Vifa6g00745 663 PANTHER U BOX DOMAIN-CONTAINING 25 627 - -
Vifa6g00745 663 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Vifa6g00745 663 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vifa6g00745 663 SUPERFAMILY RING/U-box 245 331 - -
Vifa6g00745 663 CDD RING-Ubox_PUB 256 308 IPR045210 -
Vifa6g00745 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Vifa6g00745 663 SMART arm_5 464 504 IPR000225 GO:0005515
Vifa6g00745 663 SMART arm_5 546 586 IPR000225 GO:0005515
Vifa6g00745 663 SMART arm_5 588 628 IPR000225 GO:0005515
Vifa6g00745 663 SMART arm_5 505 545 IPR000225 GO:0005515
Vifa6g00745 663 SMART arm_5 382 422 IPR000225 GO:0005515
Vifa6g00745 663 SMART arm_5 423 463 IPR000225 GO:0005515
Vifa6g00745 663 FunFam RING-type E3 ubiquitin transferase 529 646 - -
Vifa6g00745 663 MobiDBLite consensus disorder prediction 332 348 - -
Vifa6g00745 663 MobiDBLite consensus disorder prediction 328 349 - -
Vifa6g00745 663 FunFam RING-type E3 ubiquitin transferase 338 489 - -
Vifa6g00745 663 Gene3D - 2 115 IPR036537 GO:0007166
Vifa6g00745 663 FunFam RING-type E3 ubiquitin transferase 254 328 - -
Vifa6g00745 663 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515
Vifa6g00745 663 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Vifa6g00745 663 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Vifa6g00745 663 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Vifa6g00745 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Vifa6g00745 663 Gene3D - 492 646 IPR011989 -
Vifa6g00745 663 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vifa6g00745 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Vifa6g00745 663 SUPERFAMILY ARM repeat 353 645 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00745 Vifa-Chr6 265009277 265013648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00745 1 634 U-box Gene Family AT3G46510 68.446 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00745 - - gmx:100812160 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00745 6 265009277 265013648 Vifa6g00745 6 265009277 265013648 ECH