Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00743 ATGGTTTTCTCTTCTATTCAAGGTTATGTAGATCCACCTAATTGGCATCATCAGCAACCAAATCATCATCATCAACAAAATGGAAGTGATAACGCTCAACTACTTCCACCTTTACCTCCTCAAGTGGGAGGTAATACAGGTGCGTCTAGTGGTAGTGCTATGGGTTCGATCAGACCAGGATCAATGGCTGATCGAGCTCGTTTAGCAAAAATACCACCACCAGAACCAGCACTAAAGTGTCCACGTTGCGATTCAATCAACACTAAATTTTGCTACTTCAACAACTACAGCCTCACTCAACCTCGTCACTTTTGTAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCACTTAGAAATGTTCCGGTTGGCGGAGGGTGTCGTAGAAACAACAAAAAGAACAAAAGTAACCGTTCGAAATCTCCTACTCCAACAAACTCTCATGAGAAACAAACTTCATCATCGAGTGCAATCCCTTCTCATCATGAACTTATTGGTCATCAGTTACCGCAACAAATAAGCAACTTACCCTTCATGGCCTCTATGCAGAATCATCTCAGCCGTTACGTTGTTGGAAACGTTAACATGGGTCTCGCTAACTCAGATCATATGGGCTTTCAAATCGGTGTTGGTAATGGTAACTGGAACTCACCTTCTGTTTCTGCTTCAACTGCTGTAGGTGGTGGTGATGGTGGAGGTGGCGGTGTTGGAGTTGAACAGTGGCGTAACTTGCAGCAATTTCCCTTCATGAACACTTTCGAATCAAATTCCAGTGGAAACAATTCATACCATCTTCAAGGAGAAACTATAGAAACTGCAACAACTGGATTCGTTGGAGATCATATAGCTTCAAACTCTAGGGTTGTGGTTAATCAAGAGCCACCAGTTAAAAGAGAAGAAAACCGTGGCTTAAATTCACTAAGAAATTCTCTTGGTGTCTCCGAACATAATAACCAACAACAATACTATTCATGGAATGATTTATCAGGTTCTTCAACTACTCATCTCTTATAA 1014 0.4191 MVFSSIQGYVDPPNWHHQQPNHHHQQNGSDNAQLLPPLPPQVGGNTGASSGSAMGSIRPGSMADRARLAKIPPPEPALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKSNRSKSPTPTNSHEKQTSSSSAIPSHHELIGHQLPQQISNLPFMASMQNHLSRYVVGNVNMGLANSDHMGFQIGVGNGNWNSPSVSASTAVGGGDGGGGGVGVEQWRNLQQFPFMNTFESNSSGNNSYHLQGETIETATTGFVGDHIASNSRVVVNQEPPVKREENRGLNSLRNSLGVSEHNNQQQYYSWNDLSGSSTTHLL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00743 337 MobiDBLite consensus disorder prediction 137 159 - -
Vifa6g00743 337 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Vifa6g00743 337 MobiDBLite consensus disorder prediction 11 59 - -
Vifa6g00743 337 MobiDBLite consensus disorder prediction 122 159 - -
Vifa6g00743 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 258 IPR045174 GO:0003700|GO:0006355
Vifa6g00743 337 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Vifa6g00743 337 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Vifa6g00743 337 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00743 Vifa-Chr6 264592617 264593775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00743 1 230 C2C2-Dof Transcription Factor Family AT2G37590 41.509 8.22e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa6g00743 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00743 - - gmx:100801154 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01498 1 245500802 245506291 Vifa6g00743 6 264592617 264593775 PCT