Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00739 ATGGAGAGTGAGAGTGAGCAGAATAATGAGATCAATGAAGAAGGTTTGAATGAGAATGGAAATAACACTAATAACAGTATTTCATCAAGTTCACGATGGAATCCAACAAAAGAACAAATAACTCTTCTGGAGAATTTGTATAAGCAAGGTATAAAAACACCAAGTGCCGATGAAATACAACAGATTACCGCTAGGCTTAGAGCCTATGGTCACATCGAAGGAAAGAATGTCTTTTACTGGTTTCAAAATCACAAAGCTAGACAAAGACAGAAGCAGAAGCAAGAAAATATCACTTATTTCAACCGGTTTCTTCATAGACCTCAACCCATTTTCCCTTCACCGATTTATCCCAATACTATCTGTAGACCATATTGCATACCACAGCAACACAGTCATGAATTCAGCTATTACACTCAAAATCCAAAAGTGCTTCTACCTGCAGTAGGTTATAGAAGGAACCAAGGTGAAAAAGTTATGTCAAATACTAGCATGTCAAACTCAAATGTCTACAATAATCCAATGGTATATGAAAACAACATGCAAAAGAGAATATCAGAATATGAAACGTTGGATCTGTTTCCACTGCATCCAACTGGCATATTGGAAGGCAAAAAAACTGAGCAGGTGTCTTCCATTGTTTCAGTTTCTGCCGATAGTTCTACTGATGCAAATTCTGGTTCTCCTCATCATGTTATCAATCAACCCTTCTTTGACTTTTTTAATAATTCTGTAGGACAAGGTTCTTAG 747 0.3668 MESESEQNNEINEEGLNENGNNTNNSISSSSRWNPTKEQITLLENLYKQGIKTPSADEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQENITYFNRFLHRPQPIFPSPIYPNTICRPYCIPQQHSHEFSYYTQNPKVLLPAVGYRRNQGEKVMSNTSMSNSNVYNNPMVYENNMQKRISEYETLDLFPLHPTGILEGKKTEQVSSIVSVSADSSTDANSGSPHHVINQPFFDFFNNSVGQGS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00739 248 ProSiteProfiles 'Homeobox' domain profile. 26 91 IPR001356 GO:0003677
Vifa6g00739 248 Pfam Homeodomain 30 90 IPR001356 GO:0003677
Vifa6g00739 248 MobiDBLite consensus disorder prediction 12 34 - -
Vifa6g00739 248 Gene3D - 30 98 - -
Vifa6g00739 248 MobiDBLite consensus disorder prediction 1 34 - -
Vifa6g00739 248 CDD homeodomain 32 92 IPR001356 GO:0003677
Vifa6g00739 248 SMART HOX_1 28 95 IPR001356 GO:0003677
Vifa6g00739 248 FunFam WUSCHEL-related homeobox 4 30 97 - -
Vifa6g00739 248 SUPERFAMILY Homeodomain-like 30 97 IPR009057 -
Vifa6g00739 248 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 14 233 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00739 Vifa-Chr6 263816737 263817633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00739 21 241 Wox Gene Family AT5G59340 45.161 1.33e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa6g00739 Homeodomain 1.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00739 - - pvu:PHAVU_011G064900g 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00739 6 263816737 263817633 Vifa6g00739 6 263816737 263817633 ECH