Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00735 ATGGCTGGAAAAGGTGAAGGTCCTGCAATCGGAATCGATTTAGAACGCTTGATCGGTGATGCTGCCAAGAATCAAGTTGCTATGAACCCTATCAACACTGTTTTCGATGCTAAGCGTTTAATTGGAAGACGATTTAGCGATGTTTCGGTACAGAGTGACATGAAGTTGTGGCCATTTAAGGTGATTCCTGGTCCTGGTGACAAGCCAATGATTGTGGTGAACTATAAAGCTGAAGAGAAACAGTTTTCTGCTGAGGAGATATCTTCCATGGTTCTGATGAAGATGAAGGAGATCGCGGAGGCTTATCTAGGTACAACGATTAAGAATGCTGTTGTTACTGTGCCGGCTTACTTTAATGATTCACAGCGTCAGGCTACTAAGGATGCTGGTGTGATTTCGGGGCTGAATGTGATGAGGATCATTAATGAGCCCACTGCTGCTGCTATTGCTTATGGTCTTGATAAGAAAGCTACGAGTACTGGTGAGAAGAATGTTCTTATTTTTGATCTTGGTGGTGGGACTTTTGATGTTTCGCTGCTTACTATTGAGGAAGGTATTTTTGAAGTGAAAGCTACTGCTGGTGATACACATTTGGGAGGTGAGGATTTTGATAACAGAATGGTGAACCATTTTGTTCAGGAGTTTAAGAGGAAGAATAAGAAGGATATTAGTGGAAACCCTAGGGCTCTTAGGAGGTTAAGAACTGCTTGTGAGAGGGCTAAGAGGACACTTTCCTCTACAGCTCAAACCACTATTGAAATTGATTCATTGTTTGAGGGTATTGATTTTTACACTACCATTACCCGTGCTCGATTTGAAGAGCTTAACATGGATCTGTTTAGGAAATGTATGGAGCCGGTTGAGAAGTGTTTGAGGGATGCTAAGATGGATAAGAACACTGTCCATGATGTTGTTCTTGTTGGTGGGTCTACGAGGATTCCTAAAGTTCAACAGCTTTTGCAAGATTTCTTTAATGGAAAGGAGCTTTGCAAGAGCATTAACCCTGATGAGGCTGTGGCTTATGGTGCGGCTGTTCAAGCTGCTATTTTGAGCGGTGAAGGGAATGAGAAAGTGCAAGATCTGTTGTTGCTTGATGTTACTCCTCTTTCGCTTGGTTTGGAAACCGCTGGAGGGGTTATGACTGTGTTGATTCCGAGGAACACAACAATTCCTACCAAGAAAGAGCAAGTGTTTTCAACCTACTCTGATAATCAACCTGGTGTGTTGATTCAGGTTTATGAAGGAGAAAGAACAAGGACTCGTGATAACAATTTGTTGGGCAAATTTGAGTTGTCTGGTATTCCACCTGCTCCAAGGGGTGTTCCTCAGATCACTGTCTGTTTCGACATTGATGCCAATGGTATTTTGAATGTCTCTGCAGAAGACAAAACTACAGGACAGAAGAACAAGATAACAATCACCAATGACAAGGGCAGGTTGTCGAAGGAAGAGATTGAGAAGATGGTGCAGGAAGCTGAGAAATATAAATCTGAAGATGAGGAGCACAAGAAGAAGGTGGAAGCCAAAAATGCACTTGAGAATTATGCCTATAACATGAGGAACACACTCAAAGATGAAAAGATTGCTTCCAAGTTGCCGGCGGTTGATAAGAAGAAAGTCGAAGATGCTATTGAGGAGGCTATTCAATGGCTGGATGGAAATCAACTTGCAGAGGCTGATGAGTTCGAAGACAAGATGAAGGAGCTGGAAGGTATTTGCAATCCTATCATTGCTAGGATGTACCAGGGTGCGGGTGGTGAAGCTGGTGGAGCAATGGATGATGATGGTCCTACTGCTGGTAGTGGAACTGGTGCTGGGCCTAAAATTGAGGAAGTCGATTAA 1842 0.4305 MAGKGEGPAIGIDLERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDVSVQSDMKLWPFKVIPGPGDKPMIVVNYKAEEKQFSAEEISSMVLMKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTLKDEKIASKLPAVDKKKVEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIARMYQGAGGEAGGAMDDDGPTAGSGTGAGPKIEEVD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00735 613 FunFam Heat shock 70 kDa 199 282 - -
Vifa6g00735 613 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 507 588 IPR029048 -
Vifa6g00735 613 Gene3D - 509 583 IPR029048 -
Vifa6g00735 613 PRINTS 70kDa heat shock protein signature 173 183 - -
Vifa6g00735 613 PRINTS 70kDa heat shock protein signature 441 457 - -
Vifa6g00735 613 PRINTS 70kDa heat shock protein signature 110 130 - -
Vifa6g00735 613 PRINTS 70kDa heat shock protein signature 301 317 - -
Vifa6g00735 613 PRINTS 70kDa heat shock protein signature 360 379 - -
Vifa6g00735 613 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa6g00735 613 PRINTS 70kDa heat shock protein signature 333 353 - -
Vifa6g00735 613 FunFam Heat shock 70 kDa protein 503 613 - -
Vifa6g00735 613 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 356 513 IPR029047 -
Vifa6g00735 613 Gene3D - 35 90 - -
Vifa6g00735 613 FunFam Heat shock 70 kDa protein 162 224 - -
Vifa6g00735 613 Pfam Hsp70 protein 15 582 IPR013126 GO:0005524|GO:0140662
Vifa6g00735 613 FunFam Heat shock 70 kDa 355 509 - -
Vifa6g00735 613 ProSitePatterns Heat shock hsp70 proteins family signature 3. 304 318 IPR018181 -
Vifa6g00735 613 SUPERFAMILY Actin-like ATPase domain 160 352 IPR043129 -
Vifa6g00735 613 MobiDBLite consensus disorder prediction 584 613 - -
Vifa6g00735 613 FunFam Heat shock cognate 70 kDa protein 2 283 330 - -
Vifa6g00735 613 CDD HSPA1-2_6-8-like_NBD 13 351 - -
Vifa6g00735 613 Gene3D - 15 348 - -
Vifa6g00735 613 PANTHER HEAT SHOCK PROTEIN 70KDA 15 547 IPR013126 GO:0005524|GO:0140662
Vifa6g00735 613 SUPERFAMILY Actin-like ATPase domain 12 155 IPR043129 -
Vifa6g00735 613 Gene3D Actin; Chain A, domain 4 199 282 - -
Vifa6g00735 613 Coils Coil 485 505 - -
Vifa6g00735 613 ProSitePatterns Heat shock hsp70 proteins family signature 2. 167 180 IPR018181 -
Vifa6g00735 613 FunFam Heat shock 70 kDa protein 35 90 - -
Vifa6g00735 613 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 355 508 IPR029047 -
Vifa6g00735 613 Gene3D - 156 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00735 Vifa-Chr6 262679603 262681652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00735 1 613 Calmodulin-binding Proteins AT3G12580 87.097 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00735 K03283 - twl:119990582 1122.84