Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00727 ATGGCCTGGGAGTTGACCCATACTGTGAAGAGAAGTTTAGATCATGATGTTGGGGTTGCCGAAGCTTTTGATCTTAATCTTTCAGAAGATCAGTTTATATCACTTTTTCCGACCTCTTTATCATATTTGAGGTTAATTTTGAAGAGATTTGGGGATCTGAGTCACAGAGCTTTTAAAAAGATCTCATACTTCTATTCAAAAATCCTTTTAAAAGGTTTTAGTCAGTGGAAGAGCTTTTTGTCCAAAGACATATTTGAGGAAGAGTATGGAGAATCTGTCCCATCATCTGTTCAAGAGCTTCTCTGTCTTACTGATTGTAGTCTCCTTAGAAAATCAATCAATATGTTGCAGTATCACTTTGCTCTTAATGGAGATTCTCTGAAACTGAAGAACCGTTTGAAGCTATTCAAATCCATTTGGCCCACACTTGCCTTGCATGATGAGCTGATGGACTGTCATAGTCAATGTATTGATAGTTATTCTCTTTGCCAGTCTTTCAACATAATCAATCACGTTGTCGCAAAGATATCACTTTGTAAAAGGTTACTGTTTCATGATGAAGAAGGTGGGGATTTGAAAGAGGTTGCTCTGGAAATGCAAAGTAATTTGAAAGCATCCAGGATACATTTCATAAATGTTTTGGTGAACATTTGGCAGCTTATTGTTCAGAAATTTTCTTTATCCTCTGATCAGTCTGGAACAGGGAAGAGCACAAGCACATTCACCTTCCCCACTCCTCCTAGTCTTGAACCAGAACCCCCAAAATCTTCAAACAAACCAAAAATCCGAGTAATTTATCAAATGGAATCCAATAATCCTTACGAGATCTCGACGACGATGATGGTTTTGATTGGGAAGCAGCTGCGAGAGAAATCGACACGTTTTGTTGGAATTGCGGAAAAGGAAAGTGAAACGAATCCAGTTCGAGAAAATGATGCTGAAGAATCTATCTGTGACCATCATATTGATAATGAAGCAGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCTGTGACTATCAATTCCATATTGCCCAAACTGCTCTCTTTCAAAACACTCTGGTCGCCTTGCCAACAGGACTTGGCAAAACTCTCATTGCTGCTGTTGTCATAGAATGGACAGTTGATATGACCGGTCAGTTAAGTCCTCCCAAAAGAGCTCGTTTGTGGAAAACGAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGACATTCATTCTGGTAAGTGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCATAGAGCAATGGGAAATTACTCGTATTGTGAAGCAGTTCGCGAGTTAATGGCTGTACCAGTACAACTAAGGATATTGGCATTAACCGCAACACCAGGATCCAAAAAGCAGACTGTCCAAGATGAAGAAATAAACGACCGAAAGGGTTTTGAGGTAACAAAAAGCGAAAGGATAGACAAGAATACAGCTGCATTTAAGAAAAATGATGAAAGTGCTGTTGTGGAATCAACATCAACAGATGTAGTCAAGTTTATGGATTTCGATATTGGGATTTTGGTGGAGGAAGTAACAGCCAAAAGCAAAAATATGGAGTCGGATCACAATGTGCTGCAGAAGAATTTTGTGCAGGAAGAGCCTAAACATGGTAGTAGTATTACTGGTCTTGCACATGGAGTGCAGGAAAGAGATCAGAAATATATAAAAAAGTGGCATTTGATGTATAAGCATGCAGTGTTAAGTAATGCAGGTAAATGTGAAAATAAGCTTCCCTTTGTTGGGAATGAAAAGGAAGGTAGAGAGGAAGATAGCAAAGGAAATAACTCTTCTTGTCACAATTGTAGTGAAACAGATTCAGATATGGATGATGAAAAGAAGAATGTAATTGAGCTGGTGCAAAAAGCATTTGATGAAATTCTTCTCCCTGAAGTTGAAGACCTTTCCTCTGACAATCATTTAAAATCTAGAGGCGATGAAACTGATGAGCAACTCTTAGAAAAGAGTGAAGGTAAGATTGAAGAAAGGAATACCACAACTTTCGCGGAATCTCCTAAAGAAGTGCAGAAGATGGAGAACAAAACAAAAAGCTGGAGCCGTCTGAAAAGGGTAATCCTCTTGAAAAGGTTTGTAAAGGCACTAGAGAAAGTAAGAAATATCAATTCAAGAAGACCAGGAACATTGCCTTCAGATGCCAACTTCGAAGCGGAAAAAGTTTTTCTTAACCACCAAACAGCAGATGAGAGGAAAAATTCGGAGTGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGACAAAGAGTGAGGCTTTTAGTAGAAGCTTTTGAAATGGTTCTTCCATTTCAAAATGATGAAAATAGACTGCAGTCTTCCGCGGGAGTGGAGTCTCAGGAAAATCCAGTTGAATCACTTGACGCTTCCACAAATCATAGCAAGGAACAAGTAAACGAAGGAAGGGTTTCTCTGTACTCTGCTAAGACATTGCTTGGAAAAGTTTCATGTTCTAATGACTGTACTATGGAGTTTTCCGATAAAGCTAGTGAAGATCCAATGCACAAACTTTGCAATCCTTTTGAACCAGTGGAACCGGAGGAGGCTCCAACAAATCGAATAGTTAATGAAGTTCTAGTAGATTTGGTTTCAGATTTGAATACAGAAAATACGAGTACCAGATCTGCGTCGCCTGAGAGATGTTGTGAAACCAAGAATGTCATCGGTGATAATAGTGAACAATTTTCTTTGACTAAAAGCTTAGTCCTAAATGGTCTTGTGAGATCACTGAAATCTAATTTGGTTGGCCCAGAAACACCGTCAAACCTATTAGATGAACCAACAAGAGACAGAAAATATATGATTGAAAAATATCAGTCGGGAATATCTAAAGCTCCTATAAGTGCTGTTGTAGAATCTGAGACTCAGGTAGAGAAACAAAGCAACACAGGGCTATGGTTCATGGTGTATAAGCACATGGTATCAGATATAACTGAAAACAATTCTAAGACATTAACTGATGGGCCAGATGAGAAAGAGTCAGAATATGAAGGTAGCATAACAAGAGGACTTTCAGTATCTTATGAAAGTACACCTGTGAATAGTCCAGATATGCACTTCAAGGATCATATTGTAGCGGATGCCGAAGTTGAACTTCGACAGATTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATACCACCCTTCCAGACAGACAGCCACTCCCCGTCGATAACACAATTGACAGAACTGAAAGAATGAGATTCATCAAGGCATTGGAAAAAGTAAGGAAATTTAACCCAAGAGGGCCTCGATATCTACCATTAGAACCTGATTCAGAAGCTGAAAAAGTTGAATTGAGGCGTCAAGATATGGCAGAAAGAAAAGGCACAGAAGAGTGGATGCTTGATTATGCACTTAGACAGGTTGTGTCCAAATTAACTCCAGCCAAGGAAGGATCAATCACTGGAGTTCACTGGCACTGGTACAAAAAACATGGCAGAATATCATGCTTGCCAAACTCTGTTGGTGATTGTTGCAAATGTGCTTGGTGGAAAGAAATTAGAGTCAGCTTGTTTGTCCCTTCTAGATGTTGA 3600 0.3917 MAWELTHTVKRSLDHDVGVAEAFDLNLSEDQFISLFPTSLSYLRLILKRFGDLSHRAFKKISYFYSKILLKGFSQWKSFLSKDIFEEEYGESVPSSVQELLCLTDCSLLRKSINMLQYHFALNGDSLKLKNRLKLFKSIWPTLALHDELMDCHSQCIDSYSLCQSFNIINHVVAKISLCKRLLFHDEEGGDLKEVALEMQSNLKASRIHFINVLVNIWQLIVQKFSLSSDQSGTGKSTSTFTFPTPPSLEPEPPKSSNKPKIRVIYQMESNNPYEISTTMMVLIGKQLREKSTRFVGIAEKESETNPVRENDAEESICDHHIDNEAAKTWIYPVNVPLCDYQFHIAQTALFQNTLVALPTGLGKTLIAAVVIEWTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALTATPGSKKQTVQDEEINDRKGFEVTKSERIDKNTAAFKKNDESAVVESTSTDVVKFMDFDIGILVEEVTAKSKNMESDHNVLQKNFVQEEPKHGSSITGLAHGVQERDQKYIKKWHLMYKHAVLSNAGKCENKLPFVGNEKEGREEDSKGNNSSCHNCSETDSDMDDEKKNVIELVQKAFDEILLPEVEDLSSDNHLKSRGDETDEQLLEKSEGKIEERNTTTFAESPKEVQKMENKTKSWSRLKRVILLKRFVKALEKVRNINSRRPGTLPSDANFEAEKVFLNHQTADERKNSEWMLDYALQKVISKLAPAQRQRVRLLVEAFEMVLPFQNDENRLQSSAGVESQENPVESLDASTNHSKEQVNEGRVSLYSAKTLLGKVSCSNDCTMEFSDKASEDPMHKLCNPFEPVEPEEAPTNRIVNEVLVDLVSDLNTENTSTRSASPERCCETKNVIGDNSEQFSLTKSLVLNGLVRSLKSNLVGPETPSNLLDEPTRDRKYMIEKYQSGISKAPISAVVESETQVEKQSNTGLWFMVYKHMVSDITENNSKTLTDGPDEKESEYEGSITRGLSVSYESTPVNSPDMHFKDHIVADAEVELRQIEAIKMVEEAIDTTLPDRQPLPVDNTIDRTERMRFIKALEKVRKFNPRGPRYLPLEPDSEAEKVELRRQDMAERKGTEEWMLDYALRQVVSKLTPAKEGSITGVHWHWYKKHGRISCLPNSVGDCCKCAWWKEIRVSLFVPSRC 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00727 1199 SMART CaM_binding_2 666 784 IPR012417 GO:0005516
Vifa6g00727 1199 SMART CaM_binding_2 1059 1157 IPR012417 GO:0005516
Vifa6g00727 1199 Coils Coil 519 539 - -
Vifa6g00727 1199 Pfam Plant calmodulin-binding domain 1093 1152 IPR012417 GO:0005516
Vifa6g00727 1199 Pfam Plant calmodulin-binding domain 683 784 IPR012417 GO:0005516
Vifa6g00727 1199 MobiDBLite consensus disorder prediction 229 260 - -
Vifa6g00727 1199 MobiDBLite consensus disorder prediction 229 245 - -
Vifa6g00727 1199 MobiDBLite consensus disorder prediction 793 821 - -
Vifa6g00727 1199 Gene3D - 377 503 IPR027417 -
Vifa6g00727 1199 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 346 476 IPR014001 -
Vifa6g00727 1199 Gene3D - 335 376 IPR027417 -
Vifa6g00727 1199 MobiDBLite consensus disorder prediction 647 674 - -
Vifa6g00727 1199 Gene3D - 504 519 IPR027417 -
Vifa6g00727 1199 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 811 1073 IPR044681 GO:0005516
Vifa6g00727 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 460 IPR027417 -
Vifa6g00727 1199 Gene3D - 520 581 - -
Vifa6g00727 1199 SMART ultradead3 334 487 IPR014001 -
Vifa6g00727 1199 MobiDBLite consensus disorder prediction 595 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00727 Vifa-Chr6 261742456 261747337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00727 693 785 Calmodulin-binding Proteins AT5G04020 46.809 5.34e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00727 - - psat:127126396 1085.48