Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00726 ATGTTGCAGTATCACTTTGCTCTTAATGGAGATTCTCTGAAACTGAAGAACCGTTTGAAGCTATTCAAATCCATTTGGCCCACACTTGCCTTGCATGATGAGCTGATGGACTGTCATAGTCAATGTATTGATAGTTATTCTCTTTTCCAGTCTTTCAACATAATCAATCACGTTGTCGCAAAGATATCACTTTGTAAAAGGTTACTGTTTCATGATGAAGAAGGTGGGGATTTGAAAGAGGTTGCTCTGGAAATGCAAAGTAATTTGAAAGCATCCAGGATACATTTCATAAATGTTTTGGTGAACATTTGGCAGCTTATTGTTCAGAAATTTTCTTTATCCTCTGATCAGTCTGGAACAGGGAAGAGCACAAGCACATTCACCTTCCCCACTCCTCCTAGTCTTGAACCAGAACCCCCAAAATCTTCAAACAAACCAAAAATCCGAGTAATTTATCAAATGGAATCCAATAATCCTTACGAGATTCTCGACGACAATGATGGTTTTGATTGGGAAGCAGCTGCGAGAGAAATCGACACGGTTTGTCAAATGAGAAGTGGCGCGAAAACAAACGAAAGCGAATTGGAAAAGGAAAGTGAAACGAATCCAGTTCGAGAAAATGATGCTGAAGAATCTATCTGTGACCATCATATTGACAATGAAGCAGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTGCCCAAACTGCTCTCTTTCAAAACACTCTGGTCGCCTTGCCAACAGGACTTGGCAAAACTCTCATTGCTGCTGTTATAGAAGCATGCCATAACATTGTTGGGATACCGCAAGAATGGACAGTTGATATGACCGGTCAGTTAAGTCCTCCCAAAAGAGCTCGTTTATGGAAAACGAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGACATTCATTCTGGTAAGTGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCGTATTGTGAAGCAGTTCGCGAGTTAATGGTTGTACCAGTACAACTAAGGATATTGGCATTAACCGCAACACCAGGATCCAAACAGCAGACTGCCCAAGATGAAGAAATAAACGACCGAAAGGGTTTTGAGGTAACAAAAAGCGAAAGGATAGACAAGAATACAGATGCATTTAAGAAAAATGATGAAAGTGTTGTTGTGGAATCAACATCAACAGATGTAGTCAAGTTTACGGATTTCGATATTGGGATATTGGTGGAGGAAGTAACAGCCAAAAGCAAAAATATGGAGTCGGATCACAATGTGCTGCAGAAGAATTTTGTGCAGGAAGAGCCTAAACATGGTAAATGTGAAAATAATCTTCCCTTTGTTGGGAATGAAAAGGAAGGTAGAGAGGAAGATAGTAAAGGAAACAACTCTTCTTGTCACAATTGTAGTGAAACAGATTCAGATATGGATGATGAAAAGAAGAATGTAATTGAGCTGGTGCAAGCATTTGATGAAATTCTTCTCCCTGAAGTTGAAGACCTTTCCTCTGACAATCATTTAAAATCTAGAGGCGATGAAACTGATGAGCAACTCTTAGAAAAGAGTGAAGGTAAGATTGAAGAAAGGAATACCACAACTTTCGCGGAATCTCCTAAAGAAGTGCAGAAGATGGAGAACAAAACAAAAAGCTGGAGCCGTCTGAAAAGGGTAATCCTCTTGAAAAGGTTTGTAAAGGCACTAGAGAAAGTAAGAAATATCAATTCAAGAAGACCAGGAACATTGCCTTCAGATGCCAACTTCGAAGCGGAAAAAGTTTTTCTTAACCACCAAACAGCAGATGAGAGGAAAAATTCGGAGTGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGTCAAAGAGTGAGGCTTTTAGTACAAGCTTTTGAAACGGTTCTTCCATTTCAAAATGCTGAAAATAGACTGCAGTCTTCCGCGGGAGTGGAGTCTCAGGAAAATCCAGTTGAATCACTTGACGCTTCCACAAATCATAGAAAGGAACAAGTAAACGAAGGAAGGGTTTCTCTGTACTCTGCTAAGACATTGCTTGGAAAAGTTTCATGTTATAATGACTGTACTATGGAGTTTTCCGATAAAGCTAGTGAAGATCCAATGCACAAACTTTGCAATCCTTTTGAACCAGTGGAACCGGAGGAGGCTCCAACAAATCGAATAGTTGATGAAGTTCCAGAAGATTTGGTTTCAGATTTGAATACAGAAAATTCGAGTACCAGATCTGCGTCGCCTGAGAGATATTGTGAAACCAAGAATGTCATCGGTGATAATAGTGAACAATTTTCTTTGACTAAAAGCTTAGTCCTAAATGGTCTTGTGAGATCACTGAAATCTAATTTGGTTGGCCCAGAAACACCGTCAAACCTATTAGATGAACCAACAAGAGACAGAAAATATATGATTGAAAAAGATCAGCCGGGAATATCTAAAGCTCCTATAAGTGCTGTTGTAGAATCTGAGACTCAGGTAGAGAAACAAAGCAACACAGGGCTATGGTTCATGGTGTATAAGCACATGGTATCAGATATAACTGAAAACAATTCTAAGACATTAATTGATGGGCCAGATGAGAAAGAGTCAGAATATGAAGGTAGCATAACAAGAGGACTTTCGATTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATACCATCCTTCCAGACAAACAGCCACTCCCCGTCGATAACACAATTGACAGAACTGAAAGAATGAGATTCATCAAGGCATTGGAAAAAGTAAGGAAATTTAACCCAAGAGGGCCTCGATATCTACCATTAGAACCTAATTCAGAAGCTGAAAAAGTTGAATTGAGGCGTCAAGATATGGCAGAAAGAAAAGGCACAGAAGAGTGGATGCTTGATTATGCACTTAGACAGGTTGTGTCCAAATTAACTCCAGCCAAGGAAGGATCAATCACTGGTGTTCACTGGCACTGGTACAGAAAACATGGCAGAATATCATGCTTGCCAAACTCTGTTGGTGATTGTTGCAAATGTGCTTGGTGGAAAGAAATTAGAGTCAGCTTGTTTGTCCCTTCTAGATGTTGA 3126 0.3964 MLQYHFALNGDSLKLKNRLKLFKSIWPTLALHDELMDCHSQCIDSYSLFQSFNIINHVVAKISLCKRLLFHDEEGGDLKEVALEMQSNLKASRIHFINVLVNIWQLIVQKFSLSSDQSGTGKSTSTFTFPTPPSLEPEPPKSSNKPKIRVIYQMESNNPYEILDDNDGFDWEAAAREIDTVCQMRSGAKTNESELEKESETNPVRENDAEESICDHHIDNEAAKTWIYPVNVPLRDYQFHIAQTALFQNTLVALPTGLGKTLIAAVIEACHNIVGIPQEWTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMVVPVQLRILALTATPGSKQQTAQDEEINDRKGFEVTKSERIDKNTDAFKKNDESVVVESTSTDVVKFTDFDIGILVEEVTAKSKNMESDHNVLQKNFVQEEPKHGKCENNLPFVGNEKEGREEDSKGNNSSCHNCSETDSDMDDEKKNVIELVQAFDEILLPEVEDLSSDNHLKSRGDETDEQLLEKSEGKIEERNTTTFAESPKEVQKMENKTKSWSRLKRVILLKRFVKALEKVRNINSRRPGTLPSDANFEAEKVFLNHQTADERKNSEWMLDYALQKVISKLAPAQSQRVRLLVQAFETVLPFQNAENRLQSSAGVESQENPVESLDASTNHRKEQVNEGRVSLYSAKTLLGKVSCYNDCTMEFSDKASEDPMHKLCNPFEPVEPEEAPTNRIVDEVPEDLVSDLNTENSSTRSASPERYCETKNVIGDNSEQFSLTKSLVLNGLVRSLKSNLVGPETPSNLLDEPTRDRKYMIEKDQPGISKAPISAVVESETQVEKQSNTGLWFMVYKHMVSDITENNSKTLIDGPDEKESEYEGSITRGLSIEAIKMVEEAIDTILPDKQPLPVDNTIDRTERMRFIKALEKVRKFNPRGPRYLPLEPNSEAEKVELRRQDMAERKGTEEWMLDYALRQVVSKLTPAKEGSITGVHWHWYRKHGRISCLPNSVGDCCKCAWWKEIRVSLFVPSRC 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00726 1041 MobiDBLite consensus disorder prediction 665 679 - -
Vifa6g00726 1041 MobiDBLite consensus disorder prediction 190 209 - -
Vifa6g00726 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 366 IPR027417 -
Vifa6g00726 1041 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 202 917 IPR044681 GO:0005516
Vifa6g00726 1041 SMART ultradead3 230 393 IPR014001 -
Vifa6g00726 1041 Gene3D - 271 412 IPR027417 -
Vifa6g00726 1041 MobiDBLite consensus disorder prediction 450 492 - -
Vifa6g00726 1041 Gene3D - 426 568 - -
Vifa6g00726 1041 Gene3D - 413 569 IPR027417 -
Vifa6g00726 1041 MobiDBLite consensus disorder prediction 665 690 - -
Vifa6g00726 1041 SMART CaM_binding_2 901 999 IPR012417 GO:0005516
Vifa6g00726 1041 SMART CaM_binding_2 537 655 IPR012417 GO:0005516
Vifa6g00726 1041 Pfam Plant calmodulin-binding domain 935 994 IPR012417 GO:0005516
Vifa6g00726 1041 Pfam Plant calmodulin-binding domain 554 655 IPR012417 GO:0005516
Vifa6g00726 1041 MobiDBLite consensus disorder prediction 185 209 - -
Vifa6g00726 1041 Coils Coil 425 445 - -
Vifa6g00726 1041 Gene3D - 231 270 IPR027417 -
Vifa6g00726 1041 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 241 382 IPR014001 -
Vifa6g00726 1041 MobiDBLite consensus disorder prediction 115 146 - -
Vifa6g00726 1041 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00726 Vifa-Chr6 261682984 261686691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00726 931 999 Calmodulin-binding Proteins AT5G04020 43.478 5.94e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00726 - K10896 psat:127126396 933.324