Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00725 ATGGAATCCAATAATCCTTACGAGATTCTCGACGACAATGATGGTTTTGATTGGGAAGCAGCTGCGAGAGAAATCGACACGGTTTGTCAAATGAGAAGTGGCGCGAAAACAAACGAAAGCGAATTGGAAAAGGAAAGTGAAACGAATCCAGTTCGAGAAAATGATGCTGAAGAATCTATCTGTGACCATCATATTGACAATGAAGCAGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTGCCCAAACTGCTCTCTTTCAAAACACTCTGGTCGCCTTGCCAACAGGACTTGGCAAAACTCTCATTGCTGCTGTTATAGAAGCATGCCATAACATTGTTGGGATACCGCAAGAATGGACAGTTGATATGACCGGTCAGTTAAGTCCTCCCAAAAGAGCTCGTTTATGGAAAACGAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGACATTCATTCTGGTAAGTGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCGTATTGTGAAGCAGTTCGCGAGTTAATGGTTGTACCAGTACAACTAAGGATATTGGCATTAACCGCAACACCAGGATCCAAACAGCAGACTGCCCAAGATGAAGAAATAAACGACCGAAAGGGTTTTGAGGTAACAAAAAGCGAAAGGATAGACAAGAATACAGATGCATTTAAGAAAAATGATGAAAGTGTTGTTGTGGAATCAACATCAACAGATGTAGTCAAGTTTACGGATTTCGATATTGGGATATTGGTGGAGGAAGTAACAGCCAAAAGCAAAAATATGGAGTCGGATCACAATGTGCTGCAGAAGAATTTTGTGCAGGAAGAGCCTAAACATGGTAAATGTGAAAATAATCTTCCCTTTGTTGGGAATGAAAAGGAAGGTAGAGAGGAAGATAGTAAAGGAAACAACTCTTCTTGTCACAATTGTAGTGAAACAGATTCAGATATGGATGATGAAAAGAAGAATGTAATTGAGCTGGTGCAAGCATTTGATGAAATTCTTCTCCCTGAAGTTGAAGACCTTTCCTCTGACAATCATTTAAAATCTAGAGGCGATGAAACTGATGAGCAACTCTTAGAAAAGAGTGAAGGTAAGATTGAAGAAAGGAATACCACAACTTTCGCGGAATCTCCTAAAGAAGTGCAGAAGATGGAGAACAAAACAAAAAGCTGGAGCCGTCTGAAAAGGGTAATCCTCTTGAAAAGGTTTGTAAAGGCACTAGAGAAAGTAAGAAATATCAATTCAAGAAGACCAGGAACATTGCCTTCAGATGCCAACTTCGAAGCGGAAAAAGTTTTTCTTAACCACCAAACAGCAGATGAGAGGAAAAATTCGGAGTGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGTCAAAGAGTGAGGCTTTTAGTACAAGCTTTTGAAACGGTTCTTCCATTTCAAAATGCTGAAAATAGACTGCAGTCTTCCGCGGGAGTGGAGTCTCAGGAAAATCCAGTTGAATCACTTGACGCTTCCACAAATCATAGAAAGGAACAAGTAAACGAAGGAAGGGTTTCTCTGTACTCTGCTAAGACATTGCTTGGAAAAGTTTCATGTTATAATGACTGTACTATGGAGTTTTCCGATAAAGCTAGTGAAGATCCAATGCACAAACTTTGCAATCCTTTTGAACCAGTGGAACCGGAGGAGGCTCCAACAAATCGAATAGTTGATGAAGTTCCAGAAGATTTGGTTTCAGATTTGAATACAGAAAATTCGAGTACCAGATCTGCGTCGCCTGAGAGATATTGTGAAACCAAGAATGTCATCGGTGATAATAGTGAACAATTTTCTTTGACTAAAAGCTTAGTCCTAAATGGTCTTGTGAGATCACTGAAATCTAATTTGGTTGGCCCAGAAACACCGTCAAACCTATTAGATGAACCAACAAGAGACAGAAAATATATGATTGAAAAAGATCAGCCGGGAATATCTAAAGCTCCTATAAGTGCTGTTGTAGAATCTGAGACTCAGGTAGAGAAACAAAGCAACACAGGGCTATGGTTCATGGTGTATAAGCACATGGTATCAGATATAACTGAAAACAATTCTAAGACATTAATTGATGGGCCAGATGAGAAAGAGTCAGAATATGAAGGTAGCATAACAAGAGGACTTTCGATTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATACCATCCTTCCAGACAAACAGCCACTCCCCGTCGATAACACAATTGACAGAACTGAAAGAATGAGATTCATCAAGGCATTGGAAAAAGTAAGGAAATTTAACCCAAGAGGGCCTCGATATCTACCATTAGAACCTAATTCAGAAGCTGAAAAAGTTGAATTGAGGCGTCAAGATATGGCAGAAAGAAAAGGCACAGAAGAGTGGATGCTTGATTATGCACTTAGACAGGTTGTGTCCAAATTAACTCCAGCCAAGGAAGGATCAATCACTGGTGTTCACTGGCACTGGTACAGAAAACATGGCAGAATATCATGCTTGCCAAACTCTGTTGGTGATTGTTGCAAATGTGCTTGGTGGAAAGAAATTAGAGTCAGCTTGTTTGTCCCTTCTAGATGTTGA 2667 0.3986 MESNNPYEILDDNDGFDWEAAAREIDTVCQMRSGAKTNESELEKESETNPVRENDAEESICDHHIDNEAAKTWIYPVNVPLRDYQFHIAQTALFQNTLVALPTGLGKTLIAAVIEACHNIVGIPQEWTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMVVPVQLRILALTATPGSKQQTAQDEEINDRKGFEVTKSERIDKNTDAFKKNDESVVVESTSTDVVKFTDFDIGILVEEVTAKSKNMESDHNVLQKNFVQEEPKHGKCENNLPFVGNEKEGREEDSKGNNSSCHNCSETDSDMDDEKKNVIELVQAFDEILLPEVEDLSSDNHLKSRGDETDEQLLEKSEGKIEERNTTTFAESPKEVQKMENKTKSWSRLKRVILLKRFVKALEKVRNINSRRPGTLPSDANFEAEKVFLNHQTADERKNSEWMLDYALQKVISKLAPAQSQRVRLLVQAFETVLPFQNAENRLQSSAGVESQENPVESLDASTNHRKEQVNEGRVSLYSAKTLLGKVSCYNDCTMEFSDKASEDPMHKLCNPFEPVEPEEAPTNRIVDEVPEDLVSDLNTENSSTRSASPERYCETKNVIGDNSEQFSLTKSLVLNGLVRSLKSNLVGPETPSNLLDEPTRDRKYMIEKDQPGISKAPISAVVESETQVEKQSNTGLWFMVYKHMVSDITENNSKTLIDGPDEKESEYEGSITRGLSIEAIKMVEEAIDTILPDKQPLPVDNTIDRTERMRFIKALEKVRKFNPRGPRYLPLEPNSEAEKVELRRQDMAERKGTEEWMLDYALRQVVSKLTPAKEGSITGVHWHWYRKHGRISCLPNSVGDCCKCAWWKEIRVSLFVPSRC 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00725 888 Gene3D - 118 259 IPR027417 -
Vifa6g00725 888 MobiDBLite consensus disorder prediction 512 526 - -
Vifa6g00725 888 MobiDBLite consensus disorder prediction 37 56 - -
Vifa6g00725 888 MobiDBLite consensus disorder prediction 297 339 - -
Vifa6g00725 888 Gene3D - 78 117 IPR027417 -
Vifa6g00725 888 Gene3D - 273 415 - -
Vifa6g00725 888 SMART ultradead3 77 240 IPR014001 -
Vifa6g00725 888 Coils Coil 272 292 - -
Vifa6g00725 888 MobiDBLite consensus disorder prediction 32 56 - -
Vifa6g00725 888 MobiDBLite consensus disorder prediction 512 537 - -
Vifa6g00725 888 Pfam Plant calmodulin-binding domain 401 502 IPR012417 GO:0005516
Vifa6g00725 888 Pfam Plant calmodulin-binding domain 782 841 IPR012417 GO:0005516
Vifa6g00725 888 SMART CaM_binding_2 384 502 IPR012417 GO:0005516
Vifa6g00725 888 SMART CaM_binding_2 748 846 IPR012417 GO:0005516
Vifa6g00725 888 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 229 IPR014001 -
Vifa6g00725 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 213 IPR027417 -
Vifa6g00725 888 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 50 764 IPR044681 GO:0005516
Vifa6g00725 888 Gene3D - 260 417 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00725 Vifa-Chr6 261682984 261686232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00725 778 846 Calmodulin-binding Proteins AT5G04020 43.478 4.49e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00725 - K10896 psat:127126396 933.324