Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00724 ATGGGAAATTACTCGTATTGTGAAGCAGTTCGCGAGTTAATGGTTGTACCAGTACAACTAAGGATATTGGCATTAACCGCAACACCAGGATCCAAACAGCAGACTGCCCAAGATGAAGAAATAAACGACCGAAAGGGTTTTGAGGTAACAAAAAGCGAAAGGATAGACAAGAATACAGATGCATTTAAGAAAAATGATGAAAGTGTTGTTGTGGAATCAACATCAACAGATGTAGTCAAGTTTACGGATTTCGATATTGGGATATTGGTGGAGGAAGTAACAGCCAAAAGCAAAAATATGGAGTCGGATCACAATGTGCTGCAGAAGAATTTTGTGCAGGAAGAGCCTAAACATGGTAAATGTGAAAATAATCTTCCCTTTGTTGGGAATGAAAAGGAAGGTAGAGAGGAAGATAGTAAAGGAAACAACTCTTCTTGTCACAATTGTAGTGAAACAGATTCAGATATGGATGATGAAAAGAAGAATGTAATTGAGCTGGTGCAAGCATTTGATGAAATTCTTCTCCCTGAAGTTGAAGACCTTTCCTCTGACAATCATTTAAAATCTAGAGGCGATGAAACTGATGAGCAACTCTTAGAAAAGAGTGAAGGTAAGATTGAAGAAAGGAATACCACAACTTTCGCGGAATCTCCTAAAGAAGTGCAGAAGATGGAGAACAAAACAAAAAGCTGGAGCCGTCTGAAAAGGGTAATCCTCTTGAAAAGGTTTGTAAAGGCACTAGAGAAAGTAAGAAATATCAATTCAAGAAGACCAGGAACATTGCCTTCAGATGCCAACTTCGAAGCGGAAAAAGTTTTTCTTAACCACCAAACAGCAGATGAGAGGAAAAATTCGGAGTGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGTCAAAGAGTGAGGCTTTTAGTACAAGCTTTTGAAACGGTTCTTCCATTTCAAAATGCTGAAAATAGACTGCAGTCTTCCGCGGGAGTGGAGTCTCAGGAAAATCCAGTTGAATCACTTGACGCTTCCACAAATCATAGAAAGGAACAAGTAAACGAAGGAAGGGTTTCTCTGTACTCTGCTAAGACATTGCTTGGAAAAGTTTCATGTTATAATGACTGTACTATGGAGTTTTCCGATAAAGCTAGTGAAGATCCAATGCACAAACTTTGCAATCCTTTTGAACCAGTGGAACCGGAGGAGGCTCCAACAAATCGAATAGTTGATGAAGTTCCAGAAGATTTGGTTTCAGATTTGAATACAGAAAATTCGAGTACCAGATCTGCGTCGCCTGAGAGATATTGTGAAACCAAGAATGTCATCGGTGATAATAGTGAACAATTTTCTTTGACTAAAAGCTTAGTCCTAAATGGTCTTGTGAGATCACTGAAATCTAATTTGGTTGGCCCAGAAACACCGTCAAACCTATTAGATGAACCAACAAGAGACAGAAAATATATGATTGAAAAAGATCAGCCGGGAATATCTAAAGCTCCTATAAGTGCTGTTGTAGAATCTGAGACTCAGGTAGAGAAACAAAGCAACACAGGGCTATGGTTCATGGTGTATAAGCACATGGTATCAGATATAACTGAAAACAATTCTAAGACATTAATTGATGGGCCAGATGAGAAAGAGTCAGAATATGAAGGTAGCATAACAAGAGGACTTTCGATTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATACCATCCTTCCAGACAAACAGCCACTCCCCGTCGATAACACAATTGACAGAACTGAAAGAATGAGATTCATCAAGGCATTGGAAAAAGTAAGGAAATTTAACCCAAGAGGGCCTCGATATCTACCATTAGAACCTAATTCAGAAGCTGAAAAAGTTGAATTGAGGCGTCAAGATATGGCAGAAAGAAAAGGCACAGAAGAGTGGATGCTTGATTATGCACTTAGACAGGTTGTGTCCAAATTAACTCCAGCCAAGGAAGGATCAATCACTGGTGTTCACTGGCACTGGTACAGAAAACATGGCAGAATATCATGCTTGCCAAACTCTGTTGGTGATTGTTGCAAATGTGCTTGGTGGAAAGAAATTAGAGTCAGCTTGTTTGTCCCTTCTAGATGTTGA 2121 0.3937 MGNYSYCEAVRELMVVPVQLRILALTATPGSKQQTAQDEEINDRKGFEVTKSERIDKNTDAFKKNDESVVVESTSTDVVKFTDFDIGILVEEVTAKSKNMESDHNVLQKNFVQEEPKHGKCENNLPFVGNEKEGREEDSKGNNSSCHNCSETDSDMDDEKKNVIELVQAFDEILLPEVEDLSSDNHLKSRGDETDEQLLEKSEGKIEERNTTTFAESPKEVQKMENKTKSWSRLKRVILLKRFVKALEKVRNINSRRPGTLPSDANFEAEKVFLNHQTADERKNSEWMLDYALQKVISKLAPAQSQRVRLLVQAFETVLPFQNAENRLQSSAGVESQENPVESLDASTNHRKEQVNEGRVSLYSAKTLLGKVSCYNDCTMEFSDKASEDPMHKLCNPFEPVEPEEAPTNRIVDEVPEDLVSDLNTENSSTRSASPERYCETKNVIGDNSEQFSLTKSLVLNGLVRSLKSNLVGPETPSNLLDEPTRDRKYMIEKDQPGISKAPISAVVESETQVEKQSNTGLWFMVYKHMVSDITENNSKTLIDGPDEKESEYEGSITRGLSIEAIKMVEEAIDTILPDKQPLPVDNTIDRTERMRFIKALEKVRKFNPRGPRYLPLEPNSEAEKVELRRQDMAERKGTEEWMLDYALRQVVSKLTPAKEGSITGVHWHWYRKHGRISCLPNSVGDCCKCAWWKEIRVSLFVPSRC 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00724 706 MobiDBLite consensus disorder prediction 116 157 - -
Vifa6g00724 706 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 38 582 IPR044681 GO:0005516
Vifa6g00724 706 MobiDBLite consensus disorder prediction 330 344 - -
Vifa6g00724 706 Coils Coil 90 110 - -
Vifa6g00724 706 Pfam Plant calmodulin-binding domain 219 320 IPR012417 GO:0005516
Vifa6g00724 706 Pfam Plant calmodulin-binding domain 600 659 IPR012417 GO:0005516
Vifa6g00724 706 MobiDBLite consensus disorder prediction 330 355 - -
Vifa6g00724 706 SMART CaM_binding_2 566 664 IPR012417 GO:0005516
Vifa6g00724 706 SMART CaM_binding_2 202 320 IPR012417 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00724 Vifa-Chr6 261682984 261685531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00724 596 664 Calmodulin-binding Proteins AT5G04020 43.478 2.48e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00724 - - psat:127126396 933.324