Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00718 ATGCGCACAGCCACCGCCATTCTCCAATGTTCAGCCTTACCTTTACCTCAATTGTTTATTCGCGTGCGCCATCATTCATCAACCAAATTGTTCGTTGCAGGGCTTTCCTATAACACCAATGAAACGGTCCTAAGAGACACATTTAAACAACATGGGGAAATCATTGAAGTTAAAGTAATATGTGACCACAAAACTGGAGAATCAAAAGAGTACGGATTTGTTAGGTTCAATTCTGAAACTGCAGCTGCCATAGCTCGCAAAGAATTGCACGGAAAGATAGTGGACGGTAGACGCATTCGAGTGGGTTATGCGCACAAAGGGTGA 324 0.4352 MRTATAILQCSALPLPQLFIRVRHHSSTKLFVAGLSYNTNETVLRDTFKQHGEIIEVKVICDHKTGESKEYGFVRFNSETAAAIARKELHGKIVDGRRIRVGYAHKG 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00718 107 Gene3D - 15 107 IPR012677 -
Vifa6g00718 107 SUPERFAMILY RNA-binding domain, RBD 9 106 IPR035979 GO:0003676
Vifa6g00718 107 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Vifa6g00718 107 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Vifa6g00718 107 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 24 106 - -
Vifa6g00718 107 SMART rrm1_1 29 102 IPR000504 GO:0003723
Vifa6g00718 107 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 16 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00718 Vifa-Chr6 261441371 261441965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00718 28 106 Eukaryotic Initiation Factors Gene Family AT3G16380 40.506 3.18e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00718 K13195 - gmx:100306540 147.132