Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00717 ATGTCTGCGGCTCTTGATATGACACTCGACGACATCATCAAGAACAACAAAAAATCTGGATCCGGTAACTCCAGAGGCCGATCTAGACCCGCACCCGGTCCTGGACCCGCTCGCCGGGCTCCTAACCGCATCTCCAACCGTTCCACACCTTACTCCGCTGCTAAGGCGCCGGAGACGACGTGGCAGCATGATTTATATGGAGATCAGCATGTGGGTGCGGGTATTCCTGCTCAAGGTGGTCGTGCGCCTTCCATAGAAACTGGAACCAAGCTTTATATCTCTAATTTGGATTACGGCGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGATTTGAAACGACAAGGCGTTCATTACGACAGGAGTGGCAGATCGAAGGGTACTGCAGAAGTAGTCTTCTCACGGCGACAGGATGCTGTTGCTGCTGTGAAGAGATACAATAATGTTCAACTAGACGGGAAACCAATGAAGATAGAGATTGTCGGAACAAACATTTCTACACCTGGCGCAGCTCCTGCTGTAAATGCCGCTATTGGAAATTTTAATGGAATTCCTCCAAGTGGTCAAGGAAGAGTTGGAGATTTTCGAGGGCAGGGAGGAAGAGGTCAAGGCATTCGAAGAAATCGAGGACGTGGAAGAGGCAGCGGTGGAGGTCGTGGTGGTGGTCGTGGTGCCGGACGCGGTAGAGGCCGCGATGAAAAGGTATCTGCAGAAGATCTTGATGCTGAGCTGGAGAAGTATCATGCAGAGGCTATGCAAATAAACTAA 777 0.4968 MSAALDMTLDDIIKNNKKSGSGNSRGRSRPAPGPGPARRAPNRISNRSTPYSAAKAPETTWQHDLYGDQHVGAGIPAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRQGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAAPAVNAAIGNFNGIPPSGQGRVGDFRGQGGRGQGIRRNRGRGRGSGGGRGGGRGAGRGRGRDEKVSAEDLDAELEKYHAEAMQIN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00717 258 MobiDBLite consensus disorder prediction 198 244 - -
Vifa6g00717 258 Pfam C-terminal duplication domain of Friend of PRMT1 199 252 IPR025715 -
Vifa6g00717 258 Coils Coil 240 258 - -
Vifa6g00717 258 MobiDBLite consensus disorder prediction 42 56 - -
Vifa6g00717 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Vifa6g00717 258 MobiDBLite consensus disorder prediction 1 56 - -
Vifa6g00717 258 SUPERFAMILY RNA-binding domain, RBD 24 163 IPR035979 GO:0003676
Vifa6g00717 258 MobiDBLite consensus disorder prediction 228 244 - -
Vifa6g00717 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Vifa6g00717 258 SMART FoP_duplication_2 188 258 IPR025715 -
Vifa6g00717 258 SMART rrm1_1 90 162 IPR000504 GO:0003723
Vifa6g00717 258 CDD RRM_THOC4 89 163 - -
Vifa6g00717 258 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 256 - -
Vifa6g00717 258 Gene3D - 77 242 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00717 Vifa-Chr6 261371708 261373911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00717 88 191 Eukaryotic Initiation Factors Gene Family AT1G71770 29.060 1.37e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00717 K12881 - gmx:100775827 315.464