Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00682 ATGTGGAATCATAGAGAAGGTAGCCTCAATTTCACATCAGATCAATTCTATAAGAATTTTCTTTCCACACAAGAAGATATTCTTGCAAATACTATTATCAATTCCACCACTGGTTATTCACCTCTTTATCAAACTGCAAGAATCTTCAATTCACCTTCAGAGTATAGTTTTCCTGTTAACAAAAAGGGTAGGGTTTGGATTAGGCTTCATTTCTTTCCGATTTCGTATCGAAATTATAATCTTAGTGCTGCCAATTTTGCTGTTACAACCCAAAATAATGTGCTGCTTAGTAACTTTAGTGTGTCTGGGAAAAATGGTGTTATGAAGGAGTACTTAGTGAATGTGACCTTAGACGAAGTTGTTGTAACGTTTACCCCGTCGATGAATTCAACTGCTTTTGTGAATGCGATTGAAGTTGTTTCTGTGCCTGATGACCTGATTCCCGATGATGCTACCGCGTTGAGTCTGCGGAGAAGTTATACGGGGCTGTTGACACAGGCACTCGAGACGGTTTTCAGGATTAACATGGGTGGTCCAAGTGTTTCTTTTGGGGTTGATCCGCTTCGTCGAACTTGGGTTCCTGATGTAAGCTTTCTTATACTACCTAACCTTGCTAGAAACTTTTCGAATATAGGTGCTGTTAAGTATGTGAAAGGGGGACCAACAGAAAATATTGCTCCGGGTAGTGTCTATGGTACTTTAACCGAGATGAACTCGGATAGTGATCCGCGTAGCAATTTCAATGTGACATGGAAGTTTGATGTGGAGCCGGGATTTCAATACCTTGTTCGACTTCACTTTTGTGATATTGTGAGTAAGGGTCTTAATGAACTTTATTTCAATGTTTATATTGATTCGTTGTTAGCTGCAAAGGATCTTGATCTCACTGTTAAGACTAATAATGTTTTGGCTACTCCTTATTTTATGGATTTCGTTACAACACCGTCGGTCGATAATAAAATTCTTGTAAGTATTGGCCCTTCTGATGCAAATAGTGATTACCCTAATGCCATTTTGAATGGACTTGAGATCATGAAAATGAACAACTCTAAGAGCAGTCTCAGTGCATCTACAGCAGTGATTTTGACTAGTAATCATGGTTCAAGTTCTAAGAAAGTTGGCGCGATAGTTGGTGTGTGTCTTGGGATAGTTTGCGCGGTGGTTGGAGTTTTCTTTGTAGTTTTCATGAGAAGAAGACGGTTGGTACAACAAGGGCATTCAAAGACATGGGTTCCTTTATCGATCAAAGATGGAACTTCTCACACAATGGGAAGTAAATATTCAAACGCCACAACAGGAAGTGCTGCTTCGAATTTCGAGTATCGCTTCCCATTTGTGGCAGTTCAAGAGGCCACAAACAATTTTGATGAGAGTTGGGTTATTGGCGTAGGTGGTTTTGGTAAGGTTTACAAAGGTGAATTAAATGATGGAACTAAAGTTGCTTGTAAGAGGGGCAACCCTCGGTCGCATCAGGGACTTGCAGAATTCCGAACCGAAATAGAAATGTTGTCTCAGTTCCGTCATCGCCATCTGGTATCATTGATCGGATATTGTGATGAAAGGAATGAAATGATCTTGATATATGAGTACATGGAGAACGGAACTGTCAAGAGTCATCTATATGGCTCGGGTCTTCCTAGCTTAAGTTGGAAAGAGAGGCTCGAGATATGCATCGGAGCAGCTAGGGGACTTCATTACCTTCATACTGGCTATGCTAAAGCGGTTATTCACCGTGATGTAAAATCTGCAAATATCCTTCTTGATGAGAACCTCATGGCGAAAGTTGCCGATTTCGGGCTATCAAAGATCGGACCAGAAATTGATCAGACGCACGTGAGCACAGCCGTGAAAGGAAGTTTTGGCTACCTTGATCCGGAGTATTTCAGAAGGCAGCAGTTAACAGAGAAATCTGACGTGTATTCATTCGGGGTAGTTTTGGTCGAGGTTTTATGTGCAAGACCTGTTATAGATCCATCTCTTCCTAGAGAAATGGTGAATTTGGCCGAATGGTCGATGAAATGGCAGAAAAGAGGAGAACTTGTGCGAATTGTGGATCCAACTCTTGAAGGGAAAATGAGACCGGATTCTCTAAGAAAATTCGGAGAAACTGCTGAAAAATGTTTGGCTGATTTTGGTGTTGATAGGCCTTCTATGGGAGATGTATTGTGGAATCTGGAGTATGCTCTTCAACTTCAAGAGGCTGTTGTTCAAGGCGATCCTGAAGAAAACAGCACTAATATGATCGGTGAACTCTCTCTGCAAATCAATAATTTTGACCATGAAGAAAGTGTTTCGGTTGCGAAGTTTGAAGCTTCGAGTCTTGATGATCTTTCTGGTGTTTCTATGAGTAAAGTATTCTCACAGTTGGTGAAGTCTGAGGGACGGTGA 2388 0.4112 MWNHREGSLNFTSDQFYKNFLSTQEDILANTIINSTTGYSPLYQTARIFNSPSEYSFPVNKKGRVWIRLHFFPISYRNYNLSAANFAVTTQNNVLLSNFSVSGKNGVMKEYLVNVTLDEVVVTFTPSMNSTAFVNAIEVVSVPDDLIPDDATALSLRRSYTGLLTQALETVFRINMGGPSVSFGVDPLRRTWVPDVSFLILPNLARNFSNIGAVKYVKGGPTENIAPGSVYGTLTEMNSDSDPRSNFNVTWKFDVEPGFQYLVRLHFCDIVSKGLNELYFNVYIDSLLAAKDLDLTVKTNNVLATPYFMDFVTTPSVDNKILVSIGPSDANSDYPNAILNGLEIMKMNNSKSSLSASTAVILTSNHGSSSKKVGAIVGVCLGIVCAVVGVFFVVFMRRRRLVQQGHSKTWVPLSIKDGTSHTMGSKYSNATTGSAASNFEYRFPFVAVQEATNNFDESWVIGVGGFGKVYKGELNDGTKVACKRGNPRSHQGLAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMENGTVKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKIGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLVEVLCARPVIDPSLPREMVNLAEWSMKWQKRGELVRIVDPTLEGKMRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSLQINNFDHEESVSVAKFEASSLDDLSGVSMSKVFSQLVKSEGR 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00682 795 CDD STKc_IRAK 461 726 - -
Vifa6g00682 795 Gene3D Phosphorylase Kinase; domain 1 417 530 - -
Vifa6g00682 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 575 587 IPR008271 GO:0004672|GO:0006468
Vifa6g00682 795 FunFam Receptor-like protein kinase FERONIA 167 349 - -
Vifa6g00682 795 SUPERFAMILY Protein kinase-like (PK-like) 434 726 IPR011009 -
Vifa6g00682 795 Gene3D Transferase(Phosphotransferase) domain 1 531 748 - -
Vifa6g00682 795 FunFam Putative receptor-like protein kinase 3 143 - -
Vifa6g00682 795 FunFam receptor-like protein kinase FERONIA 419 530 - -
Vifa6g00682 795 SMART serkin_6 455 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00682 795 FunFam Receptor-like protein kinase FERONIA 531 746 - -
Vifa6g00682 795 Gene3D - 4 143 - -
Vifa6g00682 795 Gene3D - 166 349 - -
Vifa6g00682 795 ProSitePatterns Protein kinases ATP-binding region signature. 461 483 IPR017441 GO:0005524
Vifa6g00682 795 ProSiteProfiles Protein kinase domain profile. 455 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00682 795 Pfam Protein tyrosine and serine/threonine kinase 460 652 IPR001245 GO:0004672|GO:0006468
Vifa6g00682 795 PANTHER OS07G0166700 PROTEIN 442 732 IPR045272 GO:0004714|GO:0006468
Vifa6g00682 795 Pfam Malectin-like domain 8 347 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00682 Vifa-Chr6 252226935 252229451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00682 11 795 Receptor kinase-like Gene Family AT3G46290 66.499 0.0 1037
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa6g00682 Malectin_like 4e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00682 - - gmx:100806488 1268.06