Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00679 ATGTATACAAACTCCAACACCACATTTTCACGCGCCACCGATTCCCTCACCAATTTCCCCTCCCCCATAGACACCTGCGACTACGACTCGCTATCGCAACTCAACTCGGAGGTGACCTACAATAATAATGCTGGTGGAAATTATAACAGCTGTAGCAGCGGGTGTACTAGCTACATGGGATCGCCGAGTTCGCTAGCGAGTTACGAGACTCAACGAGTTTCACACCGGTTGATGCAGAGAAGCATTAGTAGCCACTCGCTGCAAAAGACTCATGGACCCCACCGTCACCATAACCATTTTCCTTCTCTGTTTGCTGAACTGCTTGATACAGAGAATGCTCCGGTGCGTCGAGTTTACAGTGCCGGTGATGTTCAGAGAGTTAATGGAATGCAACAATATTATCATCAATCAGATAGTCCTTTGTCAACAGAGAGCAGCATGATAATAGAACAAATGAGCAGACCAGCTAGTCCTTACAGCCCCCAGGAAAAGAAGGTTAGGATTGAGAGATATAAATCCAAGAGAAACCAGAGGAACTACAACAAGAAAATCAAGTATGTTTGCAGGAAGACATTGGCAGACAGTAGGCCACGAGTTAGAGGAAGATTTGCTAAAAATGATGAAATTGTAATGAACCCTCCAATTCAATGGAGCCATAATAGTAGTAATAATGGAGAGGAATTAGAAGATGATGAAGAGGAGGAAAATTGGGACAATTTATTTCACTCATTGCTTCCTACTTCAAATCTCCCTCGTGAAGACTCTCAATATAGTTCTTCCTTTGGTGTGCAGTATTAA 798 0.4348 MYTNSNTTFSRATDSLTNFPSPIDTCDYDSLSQLNSEVTYNNNAGGNYNSCSSGCTSYMGSPSSLASYETQRVSHRLMQRSISSHSLQKTHGPHRHHNHFPSLFAELLDTENAPVRRVYSAGDVQRVNGMQQYYHQSDSPLSTESSMIIEQMSRPASPYSPQEKKVRIERYKSKRNQRNYNKKIKYVCRKTLADSRPRVRGRFAKNDEIVMNPPIQWSHNSSNNGEELEDDEEEENWDNLFHSLLPTSNLPREDSQYSSSFGVQY 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00679 265 Pfam CCT motif 166 206 IPR010402 GO:0005515
Vifa6g00679 265 ProSiteProfiles CCT domain profile. 164 206 IPR010402 GO:0005515
Vifa6g00679 265 MobiDBLite consensus disorder prediction 241 265 - -
Vifa6g00679 265 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 70 229 IPR045281 GO:0009909
Vifa6g00679 265 MobiDBLite consensus disorder prediction 213 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00679 Vifa-Chr6 250943116 250944279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00679 155 209 C2C2-CO-like Transcription Factor Family AT5G15850 41.818 7.85e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa6g00679 CCT 2.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00679 - - aprc:113859774 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01216 1 197867750 197868922 Vifa6g00679 6 250943116 250944279 PCT