Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00676 ATGAAACAGATAGTGAGAGTAATGGAGCCATTTACAAGAGATCACCGTGGTTCACTTGAAGTCTTCAATCCATCTTCATCTGAAACCAACGGGACTCCGAATCCGAATCCGAATCCGAATCCAAGCAACTCATGGAACACTGGGACAAGCTCACGCGGCACCGAAGCTCCACCACTGCGCAATTCCATTATTTCCGATGAAGTCCCCACCGCCACCTCCTGGATGGCGCTGAAAGAAACCACACCTTCGCCAAAATCCGGCGAGTCAGGCTCCGTTGCGGAGCAGAGAGCAGCGGAGTGGGGATTAGTGCTGAAAACTGATTCGGAGACAGGAAAACCACAGGGAGTTGGTGTTCGTGGCTCTGGTGGCGACGGTGGTTCGAGGAGAGACTCGAATAACTCGGTGAGAATCTCCGGTGAGTCTTCCGATGACGGAAGGAAGGGTGGTAGGGGAATACCGAGAGTTTCGGAGGATTTGAGAGATGCTTTATCGGCTTTTCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCTAGTGCCGGGTTTTTTAGTATGACGGGTTATACTTCCAAAGAGGTCATAGGAAGAAACTGTCGATTTATGCAGGGAGCTGATACGGATCCGAATGACGTGGCAAAGATAAGAGAAGCGCTTGCGGCGGGAACGAGTTATTGTGGGAGGTTACTGAATTACAAGAAGGATGGAACAACGTTCTGGAACCTTCTAACTATTGCACCTATTAAAGACGAACATGGCAAAATACTGAAACTTATAGGAATGCAAGTGGAGGTTAGCAAGCATACAGAAGGGACGAAGGAGAAGATGTTGCGTCCCAATGGATTACCCGAATCGTTGATTCGATATGATGCTCGTCAGAAAGAGAAGGCAAACTCATCAGTTACTGAGTTGGTGGAGGCAGTGAGCAAAAGACCGCGCTCACTCAGTGAATCAGCAAACCATCTCCCCTTCAACAAAAAGCCAACAAATGGTAGTAATGACCATGCAACACCACCAAATTCCGAATCATCAAGGAGAAAATCCGGCAGCACTTTGCGTTCATTTAGACGCAAATCACATTCAGGAGCAGGCAATTCTAATTCAATGCATCCCATCACTGAGCTCCCAGAAAGCAATAACAAATCACGCCGCCGCTCTTTCATGGGTTTCATGAGGAAAAGTCTGTCAAACAATGAAAGATGGAATAGCTCTGAGGATGAAGATAGGCCTGATAGTTTTGATGAACAAAATATTGCACAAAAGAGGGAAAAGAGAAAAGGTTTTGATCTTGCTACCACACTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTCCCTGATAACCCCATTATTTTTGCCTCTGATAGCTTCTTAGAGCTTACGGAGTATTCTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCTGCAACAGTGAAAAAAATTAGATATGCTATTGACAATCAAACAGAAGTTACTGTCCAGCTCATTAATTATACCAAGACTGGTAAAAAGTTCTGGAACCTGTTTCATTTGCAGCCAATGCGTGATCAGAAGGGAGAGGTACAGTATTTTATTGGAGTTCAACTTGATGGTAGTCAACATGTTGAGCCTCTTCACAACGGCATTGCAGAAGATACAGCTAAGGAGGGAGAAAATTTGGTAAAGAAAACTGCAGAAAATGTTGATGATGCATTGAGAGAACTCCCAGATGCTAATATGAAACCAGAAGATCTATGGATGAATCATTCGAAAGTGGTTCACCCTAAACCTCATAGGAGGGAAGATGCTGCTTGGAGAGCTATTCAGAAGATCATGGAGAGTGGAGAGCAGATAGGCTTGAAGCATTTTAAGCCAATTAAACCTTTAGGCTCAGGAGACACTGGCAGTGTTCATCTGGTGGAGCTATGTGGAACTGATCATCATTTTGCCATGAAGGCTATGGACAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGTACAGAGAGAGAAATCCTAGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATATTTGTTTGATAACTGATTACTGTCCTGGAGGAGAACTATTTATGCTGCTCGACCGTCAGCCAGCAAAGGTTCTCAAGGAAGATGCTGTGAGATTCTATGCCACTGAAGTAGTTGTTGCATTGGAATATCTTCATTGTCAAGGGATAATATATAGGGATCTGAAGCCAGAAAATGTGTTACTACAGAGCACTGGACATGTGTCTTTAACAGATTTTGATTTATCATGTTTAACATCTTGCAAACCAGAGCTTATAGTTCCAAGTACAAATGACAAGAAGAAAGGACAACATGGTCCAATATTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACAGAAGAATACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACTTGTGCTGTGGATTGGTGGGCTCTAGGAATTCTTCTGTATGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGAATAGGCAAAGAACATTTGCGAATATTCTCCACAAGGATCTTAAATTTCCCAAAAGTAAACAGGTAAGTCTCAGTGCAAAACAGCTCATTTATCACTTGTTGCAAAGAGATCCAACTAGCAGGTTGGGCTCAAAGGGAGGAGCAAATGATATTAAACACCATTCCTTCTTCAAGGGTATCAACTGGGCCCTTGTTAGATGCACGAAACCGCCGGAGCTTGATGCTCCTCTTTTTGATACAAACAAAGAGGAAAAGGAAAAGGATGACAAATATGTAGATAATGGACAAGAGGATATGAGTGTCTTCTGA 2889 0.433 MKQIVRVMEPFTRDHRGSLEVFNPSSSETNGTPNPNPNPNPSNSWNTGTSSRGTEAPPLRNSIISDEVPTATSWMALKETTPSPKSGESGSVAEQRAAEWGLVLKTDSETGKPQGVGVRGSGGDGGSRRDSNNSVRISGESSDDGRKGGRGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFSMTGYTSKEVIGRNCRFMQGADTDPNDVAKIREALAAGTSYCGRLLNYKKDGTTFWNLLTIAPIKDEHGKILKLIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDARQKEKANSSVTELVEAVSKRPRSLSESANHLPFNKKPTNGSNDHATPPNSESSRRKSGSTLRSFRRKSHSGAGNSNSMHPITELPESNNKSRRRSFMGFMRKSLSNNERWNSSEDEDRPDSFDEQNIAQKREKRKGFDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIRYAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNGIAEDTAKEGENLVKKTAENVDDALRELPDANMKPEDLWMNHSKVVHPKPHRREDAAWRAIQKIMESGEQIGLKHFKPIKPLGSGDTGSVHLVELCGTDHHFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHICLITDYCPGGELFMLLDRQPAKVLKEDAVRFYATEVVVALEYLHCQGIIYRDLKPENVLLQSTGHVSLTDFDLSCLTSCKPELIVPSTNDKKKGQHGPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTCAVDWWALGILLYEMFYGYTPFRGKNRQRTFANILHKDLKFPKSKQVSLSAKQLIYHLLQRDPTSRLGSKGGANDIKHHSFFKGINWALVRCTKPPELDAPLFDTNKEEKEKDDKYVDNGQEDMSVF 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00676 962 Coils Coil 564 584 - -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 403 426 - -
Vifa6g00676 962 FunFam Putative LOV domain-containing protein 717 929 - -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 1 73 - -
Vifa6g00676 962 FunFam Putative LOV domain-containing protein 169 326 - -
Vifa6g00676 962 ProSiteProfiles Protein kinase domain profile. 633 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00676 962 MobiDBLite consensus disorder prediction 405 426 - -
Vifa6g00676 962 SUPERFAMILY PYP-like sensor domain (PAS domain) 448 547 IPR035965 -
Vifa6g00676 962 CDD PAS 182 271 IPR000014 -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 299 389 - -
Vifa6g00676 962 Gene3D Transferase(Phosphotransferase) domain 1 717 929 - -
Vifa6g00676 962 ProSiteProfiles PAC domain profile. 229 283 IPR000700 -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 140 154 - -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 936 955 - -
Vifa6g00676 962 SUPERFAMILY PYP-like sensor domain (PAS domain) 175 272 IPR035965 -
Vifa6g00676 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Vifa6g00676 962 SMART serkin_6 633 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00676 962 MobiDBLite consensus disorder prediction 361 382 - -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 105 154 - -
Vifa6g00676 962 CDD PAS 447 547 IPR000014 -
Vifa6g00676 962 ProSitePatterns Protein kinases ATP-binding region signature. 639 662 IPR017441 GO:0005524
Vifa6g00676 962 SUPERFAMILY Protein kinase-like (PK-like) 617 936 IPR011009 -
Vifa6g00676 962 PANTHER FLIPPASE KINASE 1-RELATED 151 942 - -
Vifa6g00676 962 Gene3D PAS domain 421 585 - -
Vifa6g00676 962 CDD STKc_phototropin_like 631 936 - -
Vifa6g00676 962 ProSiteProfiles PAS repeat profile. 155 225 IPR000014 -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 19 33 - -
Vifa6g00676 962 Gene3D Phosphorylase Kinase; domain 1 632 716 - -
Vifa6g00676 962 FunFam LOV domain-containing protein 421 585 - -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 936 962 - -
Vifa6g00676 962 Gene3D PAS domain 169 328 - -
Vifa6g00676 962 ProSiteProfiles PAC domain profile. 506 560 IPR000700 -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 41 58 - -
Vifa6g00676 962 FunFam LOV domain-containing protein 632 716 - -
Vifa6g00676 962 SMART pas_2 434 503 IPR000014 -
Vifa6g00676 962 SMART pas_2 157 226 IPR000014 -
Vifa6g00676 962 SMART pac_2 509 551 IPR001610 -
Vifa6g00676 962 SMART pac_2 232 274 IPR001610 -
Vifa6g00676 962 MobiDBLite consensus disorder prediction 319 354 - -
Vifa6g00676 962 Pfam PAS domain 455 547 IPR000014 -
Vifa6g00676 962 Pfam PAS domain 176 272 IPR000014 -
Vifa6g00676 962 Pfam Protein kinase domain 635 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00676 962 NCBIfam PAS domain S-box protein 182 275 IPR000014 -
Vifa6g00676 962 NCBIfam PAS domain S-box protein 457 547 IPR000014 -
Vifa6g00676 962 ProSiteProfiles PAS repeat profile. 436 505 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00676 Vifa-Chr6 249954047 249969887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00676 13 959 AGC Kinase Gene Family AT3G45780 69.192 0.0 1326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa6g00676 Pkinase 2.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00676 K20715 - gmx:100804524 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01234 1 200196178 200203396 Vifa6g00676 6 249954047 249969887 PCT