Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00672 ATGAAAGATGGAAACGATGGGGTGAAGGGATCGACTCAAATCCATGAGAGGTTTCAGGTTTCGCCGCAACCAATACCCCGAGCTCCGGTTACTTACTGGGAAAGGTTTCTGCCTGTTACATCGATAAAAGTTCTGTTGGTGGACGATGATGATTCCACACGCAATGTTGTGTGTGCTCTGTTAAAGAATTGTGGTTATGAAGTCACTGCTGTTTCGAATGGTCTTCAAGCGTGGAAAGTTCTAGAAGATCCAGGAAATCGAACTGATCTTGTTCTAACGGAGGTAGCTATGCCTTTTGTATCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACATAGCTCTGAAGAATATTCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATTGTCTTTAAGTGTTTGTCAAAAGGAGCAGCTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGTGATAGTGGGAGTGAAAGTGGGACAAACACCCGGAAATTTGCAAAGTCAAGAAGCATTTGTGCATATGACAACAATAGTGGTAGCAGTGATGAAAATGATTATGGAAGCAGAGGCTTGAGTGCTCGAGATGGAAGTGACAAAGGAAGTGGAACTCAGAGTTCATGGACTACAAATCTAGCTCAAATTAGTAGCAGCCCTTGTCCAGTTTCACCTCATAAACGATCTCATGATACTCCTGATAGCACGTGTGCCCAAGTGGTGCTTCCAAAGCCTGAAAACTTTAGTAGTAAGTGGGACCAGGCCACAGAAAAAGAGTGCCATAAACCAATTGATCATCCTGATGATATTGCAATGGGTAAAGATTTAGCTATGGGAATATCTTTGAACATGCAAGAAAAGCTTCCACATGTAGAACTATCTAACAATCCAATTTGTAAAGGAGTTAATAAGTTGTCTGATATAGATGCTATGCAGCTCAATAAAGGACATAGTAGTGTCTGTGAACAACCTAAAGAGGACAGTGATAAAACCAGGATGCAGGAAAATCAGGCTATGAATGTTGGCGTTACTGATAGCAGCAGTCCACAGGCTGAAAACAGAGATTTGAACACTTCTAATGGTTTTTCTGGTTTTGCAAAAACAAAAACAAGTTGTTGCTTCAAACAGCACCCATCACTTGAACTAACATTGAAAAGGATGGGAGAAGTAAAAGATGCTGAACATGTCACAGGTGATGAATGTAATGTTTTGAGACATTCAGATCTGTCGGCATTCTCCAAATATAATACAGCTTCCGCTTCCCAGGCTCAGACTGGAAATGTAGAAAGCTGTTCCCCACTAGACAATAGTTCAGTTGCACCAAATACAGAGACAATACAGAACTTCACATGTCACTCAAATGCCACTCTTCCAAATCAACAGTCTAATGGGAGCAACAACATCAACGACCTGACTTCCACTAATACATATCTTAGTACCAAACCTGAAAATTTTGACAAGAAACCCGAGTCTTCTAGAGGGATTGGCTCTTTTTCTTCTGAACTTCAAATTGTGCAAAATAATAGTGCCACTACATCTCAGAAGAAGACTTCTGCCCAGGAAGAATGTGCCGGAAGCGGTAAAGGACAGGCAGGAGTCTTTGAACAAGGACTCCAAGTCGAGCATGCTCGGCATCAACTTCAACATTGTAACCGCATCTTCCATAAGGAGGCAGTAGATCTCCAATCAGTTCATGATCTCTTAGTTGAAAGCACAACCAAAGATGATCAGCAATGTATGTCAAATGCGTTTGGAGAGCCAGCAGAAAGCAATGGCACAGCTACGAACTATGGTTTGGATGGAAATGCAGCTGAGAGTGATCATGGGAGCAATGGGCAGGATGGAAGCAACACTTTGACAATCAGAATGATAAATGTGAGAAATGGAAATGTGGAGGCTGGGAGCTTTGGAATTAGTGGCATTGATAAAGTAAACATTGGAAATGGGTCTTATGAACAACGATTTGCATTGAGAGAGGCTGCCTTGTTAAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAAAAGAAGGTTAGATATCAGAGCCGGAAAAAGTTGGCAGATCAGCGGCCGCGTGTTAGGGGACAATTTGTTAAACAAACAGTGTATGGTACCAATGAAGAAAATAGAGAAAGCGAGGAACTTGTATCGCCGGATAATTCTAACGGTGATCCCAAACAACACCAATCAAATTGCTGA 2241 0.4141 MKDGNDGVKGSTQIHERFQVSPQPIPRAPVTYWERFLPVTSIKVLLVDDDDSTRNVVCALLKNCGYEVTAVSNGLQAWKVLEDPGNRTDLVLTEVAMPFVSGIGLLCKIMSHIALKNIPVIMMSSHDSMGIVFKCLSKGAADFLVKPIRRNELKNLWQHVWRRCHSSSDSGSESGTNTRKFAKSRSICAYDNNSGSSDENDYGSRGLSARDGSDKGSGTQSSWTTNLAQISSSPCPVSPHKRSHDTPDSTCAQVVLPKPENFSSKWDQATEKECHKPIDHPDDIAMGKDLAMGISLNMQEKLPHVELSNNPICKGVNKLSDIDAMQLNKGHSSVCEQPKEDSDKTRMQENQAMNVGVTDSSSPQAENRDLNTSNGFSGFAKTKTSCCFKQHPSLELTLKRMGEVKDAEHVTGDECNVLRHSDLSAFSKYNTASASQAQTGNVESCSPLDNSSVAPNTETIQNFTCHSNATLPNQQSNGSNNINDLTSTNTYLSTKPENFDKKPESSRGIGSFSSELQIVQNNSATTSQKKTSAQEECAGSGKGQAGVFEQGLQVEHARHQLQHCNRIFHKEAVDLQSVHDLLVESTTKDDQQCMSNAFGEPAESNGTATNYGLDGNAAESDHGSNGQDGSNTLTIRMINVRNGNVEAGSFGISGIDKVNIGNGSYEQRFALREAALLKFRQKRKERCFEKKVRYQSRKKLADQRPRVRGQFVKQTVYGTNEENRESEELVSPDNSNGDPKQHQSNC 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00672 746 MobiDBLite consensus disorder prediction 355 374 - -
Vifa6g00672 746 SUPERFAMILY CheY-like 41 168 IPR011006 -
Vifa6g00672 746 Pfam CCT motif 672 714 IPR010402 GO:0005515
Vifa6g00672 746 MobiDBLite consensus disorder prediction 596 630 - -
Vifa6g00672 746 Pfam Response regulator receiver domain 44 155 IPR001789 GO:0000160
Vifa6g00672 746 MobiDBLite consensus disorder prediction 523 542 - -
Vifa6g00672 746 MobiDBLite consensus disorder prediction 213 239 - -
Vifa6g00672 746 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Vifa6g00672 746 PANTHER TWO-COMPONENT RESPONSE REGULATOR 43 246 IPR045279 GO:0009736
Vifa6g00672 746 SMART REC_2 42 157 IPR001789 GO:0000160
Vifa6g00672 746 MobiDBLite consensus disorder prediction 468 496 - -
Vifa6g00672 746 FunFam Two-component response regulator-like PRR37 42 200 - -
Vifa6g00672 746 ProSiteProfiles CCT domain profile. 672 714 IPR010402 GO:0005515
Vifa6g00672 746 CDD psREC_PRR 44 147 - -
Vifa6g00672 746 MobiDBLite consensus disorder prediction 468 515 - -
Vifa6g00672 746 MobiDBLite consensus disorder prediction 732 746 - -
Vifa6g00672 746 MobiDBLite consensus disorder prediction 714 746 - -
Vifa6g00672 746 MobiDBLite consensus disorder prediction 523 538 - -
Vifa6g00672 746 Gene3D - 41 193 - -
Vifa6g00672 746 MobiDBLite consensus disorder prediction 194 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00672 Vifa-Chr6 248414614 248419749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00672 26 435 Response Regulator Gene Family AT5G60100 45.694 3.29e-85 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vifa6g00672 Response_reg 8.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00672 K12129 - gmx:100785796 835.869