Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00668 ATGTTAGATCTTAATCTATACGATGCGAACTCGTCCGATTCGACTCAGGACATTGACTCGCCGATGATATCGGAGAAGTTTCATCTAACTTCATGGAATCAAATGATGGAATCAGGAACATCGAATTCCTCCATCGTCAATGCGGACGCGGACGGTTCAAGCAACAACGCAGGCGATGAGGACTCGTGCTCCACGCGCGTGAATGTGAATGACGTGTTCACCATCAGTTTCGATGTTCTTAAAATGGAAGGCTCAAACGACGTCGTAACGAAGGAGTTTTTCCCGGTGGCTGGAGGAGGTGAAGGTTTGTCTAATAATTGGAAGTTGCAAGCTACGTCGTCGTTTCCGATTAGGAATGGTTCGGTTGATCTAACGTTTGATCAGAGAAAAGAAATGAAGTTTGTTCAGCCTCCACAACAAGCGAAAAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCGCAATACAGAGGAGTCACGTTTTACAGAAGGACTGGTAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTGTTAAGTTCAGGGGAGTTGGTGCTGACATAAATTTCAATCTGAATGATTATGAGGATGATCTTAAACAGACGGAGAATTTATCCAAAGAAGAATTTGTGCACATACTTCGTCGTCAAAGTACTGGTTTCTCAAGAGGGAGTTCAAAATACAGAGGAGTAACACTCCACAAGTGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGATAAAGCAGCTATCCAAAGCAATGGAAGGGAAGCAGTGACTAATTTTGAGCCCAGCACATATCAAGGAGAGATGAAATCTGCATTCATCAATGATGGCAGCATTCAAGGATGGAAACCAATGTTTCAGGAATCGGTAATTCATCTTTAA 1008 0.4405 MLDLNLYDANSSDSTQDIDSPMISEKFHLTSWNQMMESGTSNSSIVNADADGSSNNAGDEDSCSTRVNVNDVFTISFDVLKMEGSNDVVTKEFFPVAGGGEGLSNNWKLQATSSFPIRNGSVDLTFDQRKEMKFVQPPQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGVGADINFNLNDYEDDLKQTENLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIQSNGREAVTNFEPSTYQGEMKSAFINDGSIQGWKPMFQESVIHL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00668 335 MobiDBLite consensus disorder prediction 40 63 - -
Vifa6g00668 335 FunFam AP2-like ethylene-responsive transcription factor 153 212 - -
Vifa6g00668 335 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g00668 335 SUPERFAMILY DNA-binding domain 245 304 IPR016177 GO:0003677
Vifa6g00668 335 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 313 - -
Vifa6g00668 335 MobiDBLite consensus disorder prediction 134 155 - -
Vifa6g00668 335 ProSiteProfiles AP2/ERF domain profile. 246 303 IPR001471 GO:0003700|GO:0006355
Vifa6g00668 335 Gene3D AP2/ERF domain 245 304 IPR036955 GO:0003700|GO:0006355
Vifa6g00668 335 Gene3D AP2/ERF domain 153 212 IPR036955 GO:0003700|GO:0006355
Vifa6g00668 335 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Vifa6g00668 335 Pfam AP2 domain 245 292 IPR001471 GO:0003700|GO:0006355
Vifa6g00668 335 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Vifa6g00668 335 ProSiteProfiles AP2/ERF domain profile. 154 210 IPR001471 GO:0003700|GO:0006355
Vifa6g00668 335 PRINTS Ethylene responsive element binding protein signature 247 258 IPR001471 GO:0003700|GO:0006355
Vifa6g00668 335 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Vifa6g00668 335 SMART rav1_2 246 309 IPR001471 GO:0003700|GO:0006355
Vifa6g00668 335 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Vifa6g00668 335 CDD AP2 245 305 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00668 Vifa-Chr6 246637847 246640080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00668 81 313 AP2-EREBP Transcription Factor Family AT4G36920 67.917 1.86e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa6g00668 AP2 3.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00668 K09284 - zju:107411289 427.172