Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00667 ATGTTAGATCTTAATCTATACGATGCGAACTCGTCCGATTCGACTCAGGACATTGACTCGCCGATGATATCGGAGAAGTTTCATCTAACTTCATGGAATCAAATGATGGAATCAGGAACATCGAATTCCTCCATCGTCAATGCGGACGCGGACGGTTCAAGCAACAACGCAGGCGATGAGGACTCGTGCTCCACGCGCGTGAATGTGAATGACGTGTTCACCATCAGTTTCGATGTTCTTAAAATGGAAGGCTCAAACGACGTCGTAACGAAGGAGTTTTTCCCGGTGGCTGGAGGAGGTGAAGGTTTGTCTAATAATTGGAAGTTGCAAGCTACGTCGTCGTTTCCGATTAGGAATGGTTCGGTTGATCTAACGTTTGATCAGAGAAAAGAAATGAAGTTTGTTCAGCCTCCACAACAAGCGAAAAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCGCAATACAGAGGAGTCACGTTTTACAGAAGGACTGGTAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTGTTAAGTTCAGGGGAGTTGGTGCTGACATAAATTTCAATCTGAATGATTATGAGGATGATCTTAAACAGACGGAGAATTTATCCAAAGAAGAATTTGTGCACATACTTCGTCGTCAAAGTACTGGTTTCTCAAGAGGGAGTTCAAAATACAGAGGAGTAACACTCCACAAGTGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGATAAAGCAGCTATCCAAAGCAATGGAAGGGAAGCAGTGACTAATTTTGAGCCCAGCACATATCAAGGAGAGATGAAATCTGCATTCATCAATGATGGCAGCATTCAAGGATGGAAACCAATGTTTCAGGAATCGGAAAGAGCAGATGGTATCAACAAAGCTCCTTTAAAAGGACTCCCCATTTGGGCGTGGCAAACTAATGGTCAGGTCACTGCTACCCCAGTGGCACGGGTCTCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTCCCTTTTCACCTACTCCCTTATTTCCACCAAGATCTATGAACTCAGTTTCCCACAGTCTCTATTTTACTTCGCCCCAATGCACGTCACAAGCAACACATTTCAATAATATTATCAGGGGTAAGTCCCTGCAAGCACCGCTCTAG 1272 0.4497 MLDLNLYDANSSDSTQDIDSPMISEKFHLTSWNQMMESGTSNSSIVNADADGSSNNAGDEDSCSTRVNVNDVFTISFDVLKMEGSNDVVTKEFFPVAGGGEGLSNNWKLQATSSFPIRNGSVDLTFDQRKEMKFVQPPQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGVGADINFNLNDYEDDLKQTENLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIQSNGREAVTNFEPSTYQGEMKSAFINDGSIQGWKPMFQESERADGINKAPLKGLPIWAWQTNGQVTATPVARVSAAASSGFSISAPFSPTPLFPPRSMNSVSHSLYFTSPQCTSQATHFNNIIRGKSLQAPL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00667 423 MobiDBLite consensus disorder prediction 40 63 - -
Vifa6g00667 423 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g00667 423 MobiDBLite consensus disorder prediction 134 155 - -
Vifa6g00667 423 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 92 322 - -
Vifa6g00667 423 FunFam AP2-like ethylene-responsive transcription factor 153 212 - -
Vifa6g00667 423 PRINTS Ethylene responsive element binding protein signature 247 258 IPR001471 GO:0003700|GO:0006355
Vifa6g00667 423 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Vifa6g00667 423 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Vifa6g00667 423 Pfam AP2 domain 245 292 IPR001471 GO:0003700|GO:0006355
Vifa6g00667 423 ProSiteProfiles AP2/ERF domain profile. 246 303 IPR001471 GO:0003700|GO:0006355
Vifa6g00667 423 Gene3D AP2/ERF domain 245 304 IPR036955 GO:0003700|GO:0006355
Vifa6g00667 423 Gene3D AP2/ERF domain 153 212 IPR036955 GO:0003700|GO:0006355
Vifa6g00667 423 SUPERFAMILY DNA-binding domain 245 304 IPR016177 GO:0003677
Vifa6g00667 423 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Vifa6g00667 423 ProSiteProfiles AP2/ERF domain profile. 154 210 IPR001471 GO:0003700|GO:0006355
Vifa6g00667 423 SMART rav1_2 246 309 IPR001471 GO:0003700|GO:0006355
Vifa6g00667 423 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Vifa6g00667 423 CDD AP2 245 305 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00667 Vifa-Chr6 246636827 246640080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00667 135 313 AP2-EREBP Transcription Factor Family AT4G36920 84.916 4.30e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa6g00667 AP2 4.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00667 K09284 - gmx:100812898 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01494 1 244317224 244320613 Vifa6g00667 6 246636827 246640080 PCT