Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00662 ATGGCCGGAGTTAATCAAAACGGCGTCGCCGAGTTCCCGGCGGTTCCGACTCACGGTGGACAGTTCGTTCAATACAACGTGTTCGGTAATCTCTTTGAGGTTACTGCTAAGTATCGTCCTCCGATCATGCCTATCGGTCGCGGCGCTTACGGAATCGTTTGTTCGCTGTTGAACACGGAGACGAATGAATTGGTTGCTGTTAAGAAGATAGCGAATGCTTTCGATAATCATATGGATGCGAAGCGTACGCTGCGTGAGATTAAGCTTCTTAGGCATTTAGATCATGAGAATGTGAGTTATCTTTCTGTTAACAAAGTTTAA 321 0.4611 MAGVNQNGVAEFPAVPTHGGQFVQYNVFGNLFEVTAKYRPPIMPIGRGAYGIVCSLLNTETNELVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVSYLSVNKV 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00662 106 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Vifa6g00662 106 ProSiteProfiles Protein kinase domain profile. 39 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00662 106 SUPERFAMILY Protein kinase-like (PK-like) 21 98 IPR011009 -
Vifa6g00662 106 Pfam Protein kinase domain 43 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00662 106 Gene3D Phosphorylase Kinase; domain 1 16 104 - -
Vifa6g00662 106 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 37 99 - -
Vifa6g00662 106 FunFam Mitogen-activated protein kinase 24 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00662 Vifa-Chr6 245302850 245303300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00662 11 98 MAP Kinase Gene Family AT3G45640 84.091 4.34e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa6g00662 Pkinase 2.6e-11 CL0016