Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00657 ATGGTTTTTTTCAGAGTTAAATTACCGCCAATGGATCTGATGCGTTCCGAGAAGATGACCTTCGTTCAACTCATCATTCCCGCCGAGTCCGCTCACCGAGCCATCACCTATTTAGGCCAACTCGGTCTTCTTCAATTCCGTGACTTAAATGCTGAAAAAAGTCCCTTCCAGAGAACATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCCTGATGGATCAGATCAATAAAGCTGGGATAATGTCTCCCAGTCCTGTCTTGCAAACAGATACATACTTGGAGGATATAGAGGTGCATCTTGCTGAGCATGAACATGAGATAATTGAAATGAACTCTAACAGTGAGAAACTTCAGCAATCATATAACGAACTCCTTGAGTTCAAGAGTGTACTGCAAAAGGCATGTAGTTTTCTTGTTTCAAATCATGGCCATGCCGTTTCAGAAGAGAGAGAACTGGAGGAAAATGTTTACTCAATTGGAGACTTTGTCGAAACGCCATTTTTGTTTGAACAGGAAATGATGCCTGATCTGTCAAAACCAAACCAATCTGGTTTAAGATTTATCAGCGGGATAATTTGTAAATCCAAAGTTCTCAGGTTTGAAAGAATGTTGTTTCGTGCCACAAGAGGCAATATGCTTTTCAATCAGGCACCAGCTGATGAACAAATTATGGATCCTATTTCAACTGAGATGGTTGAGAAGACAGTGTTTGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACAAAGATTCTAAAAATTTGCGAAGCATTCGGTGCAAATTGTTACCCTGTTCCTGAAGATATAAGTAAACAAAGGCAAATAACTCAGGAGGTTTCATCACGCCTTGCTGACTTAGAGGCCACTTTGGATGCTGGAATTAGGCATCGGAATAAGGCTCTATCTTCTGTAGGAGGTCATTTAGCGAAATGGATGGACATGGTAAGAAGAGAGAAGGCTGTGTATGATACGTTGAACATGTTAAATTTTGATGTCACCAAAAAATGTCTTGTGGCAGAGGGCTGGTGTCCAATCTTTGCAAGAACACAGATTCAAGAGGCACTGCAACGTGCAACTTTTGACAGCAATTCTCAAGTGGGTGTAATCTTTCACTCAATGGATGCACTGGAATCGCCACCTACATATTTTAGGACCAACAGTTTCACCAATCCTTATCAAGAAATTGTAGATGCATATGGTGTTGCAAGATATCAAGAAGCAAACCCTGCAGTTTACACAACTATCATATTCCCATTTCTTTTTGCGGTGATGTTTGGGGACTGGGGCCATGGAATATGCCTACTGCTTGGAGCATTGGTTCTTATAGCACATGAAAGAAAACTCGGCAATCAGCGACTGGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGCTTCTTCTGATGTCACTATTTTCAATGTATTGTGGGTTAATCTACAACGAGTTCTTCTCAGTTCCTTTTCACATATTTGGTGCGTCTGCTTACAAATGCCGAGATATTTCATGCAGGGATGCACATACTACTGGCTTAGTAAAATACAGAGAACCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCAGAATTGCCCTTTTTGAACTCTCTCAAGATGAAGATGTCCATTCTATTTGGTGTAGTGCATATGAACTTAGGAATTATGTTAAGTTATTTCAATGCTCGTTTCTTTGGCAGTTCGCTGGATATAAGGTATCAGTTTGTGCCGCAGATGATTTTCCTCAACAGTCTATTTGGGTATCTTTCCCTTCTCATTGTTGTCAAGTGGTGTTCTGGGTCTCAGGCAGACCTTTATCATATAATGATTTACATGTTTTTAAGCCCTCTTGACAATCTTGGTGAGAATGAGTTGTTCAGGGGTCAAAGGCCACTTCAAGTTTTGTTATTGGTTCTGGCTCTAATTGCAGTTCCATGGATGCTCTTTCCAAAGCCTTTTATATTAAAGAAACTTCATAATGAGAGATTTCAAGGACGCAATTACGGTGTTCTTAATACCTCTGAGGTGGATCTTGAGGTGGAACCAGATTCTGCAAGGGATTCTGCCAGGCAACATCGTGAGGAATTTAATTTCAGTGAGGTTTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTGGGTTCTGTTTCAAATACGGCATCATATCTCCGACTTTGGGCATTAAGCTTGGCACACTCAGAACTTTCAACTGTTTTTTATGAGAAAGTCCTACTGCTAGCTTGGGGGTATGACAATCTTATCATTCGATTAGTGGGGCTAGTTGTTTTTGCCTTTGCAACTGCTTTTATACTACTTATGATGGAGACTCTGAGTGCTTTTCTTCATGCCCTGCGTCTTCATTGGGTTGAATTTCAAAATAAATTCTACCATGGTGATGGCTACAAGTTCAAACCCTTTTCTTTTGCCGCCTTAACAGAGGATGAAAATTGA 2475 0.4085 MVFFRVKLPPMDLMRSEKMTFVQLIIPAESAHRAITYLGQLGLLQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFLMDQINKAGIMSPSPVLQTDTYLEDIEVHLAEHEHEIIEMNSNSEKLQQSYNELLEFKSVLQKACSFLVSNHGHAVSEERELEENVYSIGDFVETPFLFEQEMMPDLSKPNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEQIMDPISTEMVEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITQEVSSRLADLEATLDAGIRHRNKALSSVGGHLAKWMDMVRREKAVYDTLNMLNFDVTKKCLVAEGWCPIFARTQIQEALQRATFDSNSQVGVIFHSMDALESPPTYFRTNSFTNPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALVLIAHERKLGNQRLGSFMEMLFGGRYVLLLMSLFSMYCGLIYNEFFSVPFHIFGASAYKCRDISCRDAHTTGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVVHMNLGIMLSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIVVKWCSGSQADLYHIMIYMFLSPLDNLGENELFRGQRPLQVLLLVLALIAVPWMLFPKPFILKKLHNERFQGRNYGVLNTSEVDLEVEPDSARDSARQHREEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLVGLVVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFAALTEDEN 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00657 824 Coils Coil 99 126 - -
Vifa6g00657 824 Pfam V-type ATPase 116kDa subunit family 37 816 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vifa6g00657 824 PIRSF ATP6V0A1 9 824 IPR026028 GO:0000220|GO:0046961
Vifa6g00657 824 PANTHER VACUOLAR PROTON ATPASES 13 822 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00657 Vifa-Chr6 244545573 244559812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00657 4 817 Primary Pumps ATPases(2) AT2G28520 79.018 0.0 1321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00657 K02154 - gmx:100800799 1464.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01482 1 243001854 243011585 Vifa6g00657 6 244545573 244559812 PCT