Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00652 ATGGATAAAGAGGAAGCCCCCAGAAGAATGACCAGGTTTTCAGCATCAACATCAACTTCAAATATTCTACATGCAACAAAAGGAAACAACCTTGAAACACTAACAACCAATGAACTTTTAGTTGGAGGGGACTCCATTAGCCTAGATGATATAATTGCCAATTTTCCTGCTAGAAGTAGCCAAATTCTTGAGATCGCGCGTCTTTTGGGACCGTTGAATTCACCACTACTTCCTTTGTTTATGTATGGAGGTGCTTCTACTGGAAAAACTAGTATCATTCTTCAATTGTTTAGACATCTCAACCGCCCTATTGTTTATTCTAGTTGTAGGACGTGTTATAATCAACGTATTTTGTTCGAGTCTGTTCTAAATCAGTTGCTTCTCCATAGAAAAAATGTTGCCAATTGTTATACAAATGCTAAGCGCTGTGAAAGACCGTCTGATTTTGTCAATTTCCTTCGGGAAGCATTGACAAGTGTTATAAATAATCTGAAGGAGAAATCAAACAAGTTGGTCTCAGGAAATAAAATACACGGGGGAATGGGAAATATAATCTACCTAGTATTTGACAATTTTCATCTTGTTAGAGATTGGGATAAAAGCTCTACTATATTACCCTTGTTGTTTAATCTCTATGATATGCTAAAGATGCCAGAGGTTGGTCTGATTTTCATCAGTGGTACTTCCCCAGATACCTTTTACTCTAACATGGGTTATGTTGAGCCCATCCCCATTTACTTTCCTGATTATACTGAAGGTGATATTCGTCAAATACTATTGAGAAACCAAGCGAACCAGAAGTTGTATTCTTCATTTCTCGACGTAGCTCTGAGACCTTTCTGTAGAATTACTAGGCAGGTTGGTGAATTGTCTAATGCGTTAAAGCCACTATTTGAAAAATATTGCGAACCTTTAAGTGATAAGGGAAAAGGAGTTATCCCTACTGAAGACATGAAGAGGAGGCTATTCAATCATATCAAGCCTCATATTGCCTCATCTCTGAATGATGTATTTAAGGTTTCGTCTCCTGCTTCAAGTAAAGTTAAGGTCGGTAAAGAGACAAAGCATAAGGGGAGTCCTAAGAGATCAGAGAGATTTGAAGAAATCGGTGATCTTGATTTTCATATGTCAACTAGTGCAAAGTATCTTCTTATTTCATCATTTCTTGCCTCCAGAAACCCTGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAAAGGAAGGCCTCCGAGAAAGTGCTGGAAAAGAAAGAAATTTTAGAAGAGGAACTACTAATGAAAGGACCTGGAACTTTCCCATTGGAGAGGTTGATAGCCATCTTTCAGTGTATTGTATCTGTTGCAGAAGAGCCATATGATGAAGAGGAGCCAAACAGCAATGAATTAGGAGCTGAATGTAGCAATGGTTCACTGATCTCTGACGTTCTTTTGCAGCTATCCACTCTCTGTAATGCTAATTTTATTTTCAAAGGAAAAAGCTGTCCAATTGAGGGTTCAACTCGGTATCGATCAACTATATCTGAAAACCTGGCCTTAAAGGTTGCAAGAAGCCTAAAGTTCCCACTGTCAAAATATTTGTACAGAAATTAG 1614 0.3817 MDKEEAPRRMTRFSASTSTSNILHATKGNNLETLTTNELLVGGDSISLDDIIANFPARSSQILEIARLLGPLNSPLLPLFMYGGASTGKTSIILQLFRHLNRPIVYSSCRTCYNQRILFESVLNQLLLHRKNVANCYTNAKRCERPSDFVNFLREALTSVINNLKEKSNKLVSGNKIHGGMGNIIYLVFDNFHLVRDWDKSSTILPLLFNLYDMLKMPEVGLIFISGTSPDTFYSNMGYVEPIPIYFPDYTEGDIRQILLRNQANQKLYSSFLDVALRPFCRITRQVGELSNALKPLFEKYCEPLSDKGKGVIPTEDMKRRLFNHIKPHIASSLNDVFKVSSPASSKVKVGKETKHKGSPKRSERFEEIGDLDFHMSTSAKYLLISSFLASRNPATLDASLFDSKGGSDNRKRKRKASEKVLEKKEILEEELLMKGPGTFPLERLIAIFQCIVSVAEEPYDEEEPNSNELGAECSNGSLISDVLLQLSTLCNANFIFKGKSCPIEGSTRYRSTISENLALKVARSLKFPLSKYLYRN 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00652 537 MobiDBLite consensus disorder prediction 405 420 - -
Vifa6g00652 537 FunFam Origin of replication complex subunit 5 55 236 - -
Vifa6g00652 537 Pfam AAA ATPase domain 55 211 IPR041664 -
Vifa6g00652 537 Coils Coil 411 431 - -
Vifa6g00652 537 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 47 536 IPR020796 GO:0000808|GO:0005634|GO:0006260
Vifa6g00652 537 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 245 534 IPR047088 -
Vifa6g00652 537 Gene3D - 55 235 IPR027417 -
Vifa6g00652 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 321 IPR027417 -
Vifa6g00652 537 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00652 Vifa-Chr6 243725571 243727876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00652 1 536 Core DNA Replication Machinery Family AT4G29910 58.845 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00652 K02607 - gmx:100784340 812.372