Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00651 ATGGATAAAGAGGAAGCCCCCAGAAGAATGACCAGGTTTTCAGCATCAACATCAACTTCAAATATTCTACATGCAACAAAAGGAAACAACCTTGAAACACTAACAACCAATGAACTTTTAGTTGGAGGGGACTCCATTAGCCTAGATGATATAATTGCCAATTTTCCTGCTAGAAGTAGCCAAATTCTTGAGATCGCGCGTCTTTTGGGACCGTTGAATTCACCACTACTTCCTTTGTTTATGTATGGAGGTGCTTCTACTGGAAAAACTAGTATCATTCTTCAATTGTTTAGACATCTCAACCGCCCTATTGTTTATTCTAGTTGTAGGACGTGTTATAATCAACGTATTTTGTTCGAGTCTGTTCTAAATCAGTTGCTTCTCCATAGAAAAAATGTTGCCAATTGTTATACAAATGCTAAGCGCTGTGAAAGACCGTCTGATTTTGTCAATTTCCTTCGGGAAGCATTGACAAGTGTTATAAATAATCTGAAGGAGAAATCAAACAAGTTGGTCTCAGGAAATAAAATACACGGGGGAATGGGAAATATAATCTACCTAGTATTTGACAATTTTCATCTTGTTAGAGATTGGGATAAAAGCTCTACTATATTACCCTTGTTGTTTAATCTCTATGATATGCTAAAGATGCCAGAGGTTGGTCTGATTTTCATCAGTGGTACTTCCCCAGATACCTTTTACTCTAACATGGGTTATGTTGAGCCCATCCCCATTTACTTTCCTGATTATACTGAAGGTGATATTCGTCAAATACTATTGAGAAACCAAGCGAACCAGAAGTTGTATTCTTCATTTCTCGACGTAGCTCTGAGACCTTTCTGTAGAATTACTAGGCAGGTTGGTGAATTGTCTAATGCGTTAAAGCCACTATTTGAAAAATATTGCGAACCTTTAAGTGATAAGGGAAAAGGAGTTATCCCTACTGAAGACATGAAGAGGAGGCTATTCAATCATATCAAGCCTCATATTGCCTCATCTCTGAATGATGTATTTAAGGTTTCGTCTCCTGCTTCAAGTAAAGTTAAGGTCGGTAAAGAGACAAAGCATAAGGGGAGTCCTAAGAGATCAGAGAGATTTGAAGAAATCGGTGATCTTGATTTTCATATGTCAACTAGTGCAAAGTATCTTCTTATTTCATCATTTCTTGCCTCCAGAAACCCTGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAAAGGAAGGCCTCCGAGAAAGTGCTGGAAAAGAAAGAAATTTTAGAAGAGGAACTACTAATGAAAGGACCTGGAACTTTCCCATTGGAGAGGTTGATAGCCATCTTTCAGTGTATTGTATCTGTTGCAGAAGAGCCATATGATGAAGAGGAGCCAAACAGCAATGAATTAGGAGCTGAATGTAGCAATGGTTCACTGATCTCTGACGTTCTTTTGCAGCTATCCACTCTCTGTAATGCTAATTTTATTTTCAAAGGAAAAAGCTGTCCAATTGAGGGTTCAACTCGGTATCGATCAACTATATCTGAAAACCTGGCCTTAAAGCAGGTTGCAAGAAGCCTAAAGTTCCCACTGTCAAAATATTTGTACAGAAATTAG 1617 0.3822 MDKEEAPRRMTRFSASTSTSNILHATKGNNLETLTTNELLVGGDSISLDDIIANFPARSSQILEIARLLGPLNSPLLPLFMYGGASTGKTSIILQLFRHLNRPIVYSSCRTCYNQRILFESVLNQLLLHRKNVANCYTNAKRCERPSDFVNFLREALTSVINNLKEKSNKLVSGNKIHGGMGNIIYLVFDNFHLVRDWDKSSTILPLLFNLYDMLKMPEVGLIFISGTSPDTFYSNMGYVEPIPIYFPDYTEGDIRQILLRNQANQKLYSSFLDVALRPFCRITRQVGELSNALKPLFEKYCEPLSDKGKGVIPTEDMKRRLFNHIKPHIASSLNDVFKVSSPASSKVKVGKETKHKGSPKRSERFEEIGDLDFHMSTSAKYLLISSFLASRNPATLDASLFDSKGGSDNRKRKRKASEKVLEKKEILEEELLMKGPGTFPLERLIAIFQCIVSVAEEPYDEEEPNSNELGAECSNGSLISDVLLQLSTLCNANFIFKGKSCPIEGSTRYRSTISENLALKQVARSLKFPLSKYLYRN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00651 538 MobiDBLite consensus disorder prediction 405 420 - -
Vifa6g00651 538 FunFam Origin of replication complex subunit 5 55 236 - -
Vifa6g00651 538 Gene3D - 55 235 IPR027417 -
Vifa6g00651 538 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 245 535 IPR047088 -
Vifa6g00651 538 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 47 537 IPR020796 GO:0000808|GO:0005634|GO:0006260
Vifa6g00651 538 Coils Coil 411 431 - -
Vifa6g00651 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 321 IPR027417 -
Vifa6g00651 538 MobiDBLite consensus disorder prediction 400 420 - -
Vifa6g00651 538 Pfam AAA ATPase domain 55 211 IPR041664 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00651 Vifa-Chr6 243725571 243727876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00651 1 537 Core DNA Replication Machinery Family AT4G29910 58.550 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00651 K02607 - gmx:100784340 807.749