Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00640 ATGTTGGGTCGGGCGGAAGTGATCCGGGGCGGTAAAGAAAGTGGTAGTATCTTAAAGTCAAGTAAAGCCATGGCTCTGATCCTTCATACTAGCCAAGGAAACAAAAATGCCTACAAGGCACTCATTGCTGCCGAGTATGCTTCCGTTGAAGTTCAATACACCCCTCATTTTGAGTTTGGTGTCTCCAACAAAACGCCTCAATTCCTCAAAATGAACCCTCTCGGCAAGGTTCCCGTGTTGGAAACCCCCCACGGCCCTGTCTTCGAGAGCAACGCTATTGCTCGTTATGTTGCTAGATCCAAGGATGACACCACTCTCTATGGATCTTCTTTGATCGAATATGCTCAAGTTGAACAATGGATTGATTTTTCATCTTTTGAGCTTGATTCCAATCTTCAGAGGTGGTACTACCCTAGATTGGGATATGGAACATACCTTCCTCCGGCCGAGGAGAATGCTATTACTGCCTTGAAAAGAGGTTTGACTGCCTTGAACACTCACCTTGCCTCCAATACTTACCTGGTTGGCCATTCTGTCACCCTTGCTGACATCATTATGATAACCAATTTGTATTTTGGTTTCACCAAAATCTTGGTCAAGAGCTTCACCTCTCAGTATCCTCATGTCCAGAGATACTTCTGGACCTTGGTCAACCACCCAAACTTCCGCAAGATATTGGGTCAGGTCAAGCAGGCCGAAGCTGTACCACCTCTTCAATCTGCAAAGAAGCCTGCCCAGCCAAAGGACGAACCAAAGAAGCCTGCTCAGCCCAAGGACGAACCAAAGAAGCCTGCTCAGCCCAAGGACGAACCAAAGGCTGAAGAGGAGGCTCCCAAGCCCAAACCCAAGAATCCACTGGATCTTCTTCCTCCTAGTAAGATGGTACTCGATGAATGGAAAAGACTTTATTCAAACACTAAAACCAACTTCAGGGAGGTTGCAATCAAAGGATTTTGGGATATGTATGATCCTGAAGGATACTCTCTCTGGTTCTGTGATTACAAATACCAAGATGAGAACACCGTTTCCTTTGTGACTTTGAACAAGGTTGGTGGATTTCTTCAGAGGATGGATTTGGCCCGCAAATATGCATTTGGAAAGATGCTTATAATTGGATCTGAGCCACCTTTTAAGGTGAAGGGATTGTGGCTGTTCCGTGGGCCAGAAATCCCTAAATTTGTGATGGAAGAATGCTATGACATGGAGCTCTATGAGTGGACTAAGGTTGACATATCAGATGAAGCTCAGAAGGAGCGTGTGAGTCAGATGATTGAAGATTTTGAACCTTTTGAGGGAGAGACTCTTTTGGATGCCAAGTGCTTCAAGTGA 1329 0.4552 MLGRAEVIRGGKESGSILKSSKAMALILHTSQGNKNAYKALIAAEYASVEVQYTPHFEFGVSNKTPQFLKMNPLGKVPVLETPHGPVFESNAIARYVARSKDDTTLYGSSLIEYAQVEQWIDFSSFELDSNLQRWYYPRLGYGTYLPPAEENAITALKRGLTALNTHLASNTYLVGHSVTLADIIMITNLYFGFTKILVKSFTSQYPHVQRYFWTLVNHPNFRKILGQVKQAEAVPPLQSAKKPAQPKDEPKKPAQPKDEPKKPAQPKDEPKAEEEAPKPKPKNPLDLLPPSKMVLDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYQDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGPEIPKFVMEECYDMELYEWTKVDISDEAQKERVSQMIEDFEPFEGETLLDAKCFK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00640 442 SUPERFAMILY Thioredoxin-like 20 108 IPR036249 -
Vifa6g00640 442 FunFam Elongation factor 1-gamma 1 282 442 - -
Vifa6g00640 442 Pfam Glutathione S-transferase, N-terminal domain 25 99 IPR004045 -
Vifa6g00640 442 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 282 442 IPR001662 GO:0003746|GO:0006414
Vifa6g00640 442 SFLD Main (cytGST) 28 213 - -
Vifa6g00640 442 SUPERFAMILY eEF1-gamma domain 282 442 IPR036433 GO:0003746|GO:0006414
Vifa6g00640 442 SMART EF1G_2 281 389 IPR001662 GO:0003746|GO:0006414
Vifa6g00640 442 FunFam Elongation factor 1 gamma 103 239 - -
Vifa6g00640 442 SUPERFAMILY GST C-terminal domain-like 96 235 IPR036282 -
Vifa6g00640 442 SFLD Glutathione Transferase (cytosolic) 28 213 IPR040079 -
Vifa6g00640 442 CDD GST_C_EF1Bgamma_like 113 233 - -
Vifa6g00640 442 Gene3D - 103 237 - -
Vifa6g00640 442 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 24 442 IPR044628 GO:0004364
Vifa6g00640 442 CDD GST_N_EF1Bgamma 28 100 - -
Vifa6g00640 442 Pfam Elongation factor 1 gamma, conserved domain 281 388 IPR001662 GO:0003746|GO:0006414
Vifa6g00640 442 FunFam Elongation factor 1B gamma 24 97 - -
Vifa6g00640 442 Gene3D Glutaredoxin 23 97 - -
Vifa6g00640 442 MobiDBLite consensus disorder prediction 245 282 - -
Vifa6g00640 442 Pfam Glutathione S-transferase, C-terminal domain 151 220 IPR004046 -
Vifa6g00640 442 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 282 442 IPR036433 GO:0003746|GO:0006414
Vifa6g00640 442 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 110 238 IPR010987 -
Vifa6g00640 442 MobiDBLite consensus disorder prediction 236 290 - -
Vifa6g00640 442 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 24 105 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00640 Vifa-Chr6 242617748 242619678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00640 24 442 Eukaryotic Initiation Factors Gene Family AT1G57720 73.634 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00640 K03233 - gmx:547637 653.284