Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00639 ATGTTGGGTCGGGCGGAAGTGATCCGGGGCGGTAAAGAAAGGTGGATCGTGTGGAATACAAAAACCCTAAGACCAAGTGAGAATAGAAGCACATCTGTCTCCGCCGCTGGCCTATCAATTGAAGTGATCTTAAAGTCAAGTAAAGCCATGGCTCTGATCCTTCATACTAGCCAAGGAAACAAAAATGCCTACAAGGCACTCATTGCTGCCGAGTATGCTTCCGTTGAAGTTCAATACACCCCTCATTTTGAGTTTGGTGTCTCCAACAAAACGCCTCAATTCCTCAAAATGAACCCTCTCGGCAAGGTTCCCGTGTTGGAAACCCCCCACGGCCCTGTCTTCGAGAGCAACGCTATTGCTCGTTATGTTGCTAGATCCAAGGATGACACCACTCTCTATGGATCTTCTTTGATCGAATATGCTCAAGTTGAACAATGGATTGATTTTTCATCTTTTGAGCTTGATTCCAATCTTCAGAGGTGGTACTACCCTAGATTGGGATATGGAACATACCTTCCTCCGGCCGAGGAGAATGCTATTACTGCCTTGAAAAGAGGTTTGACTGCCTTGAACACTCACCTTGCCTCCAATACTTACCTGGTTGGCCATTCTGTCACCCTTGCTGACATCATTATGATAACCAATTTGTATTTTGGTTTCACCAAAATCTTGGTCAAGAGCTTCACCTCTCAGTATCCTCATGTCCAGAGATACTTCTGGACCTTGGTCAACCACCCAAACTTCCGCAAGATATTGGGTCAGGTCAAGCAGGCCGAAGCTGTACCACCTCTTCAATCTGCAAAGAAGCCTGCCCAGCCAAAGGACGAACCAAAGAAGCCTGCTCAGCCCAAGGACGAACCAAAGAAGCCTGCTCAGCCCAAGGACGAACCAAAGGCTGAAGAGGAGGCTCCCAAGCCCAAACCCAAGAATCCACTGGATCTTCTTCCTCCTAGTAAGATGGTACTCGATGAATGGAAAAGACTTTATTCAAACACTAAAACCAACTTCAGGGAGGTTGCAATCAAAGGATTTTGGGATATGTATGATCCTGAAGGATACTCTCTCTGGTTCTGTGATTACAAATACCAAGATGAGAACACCGTTTCCTTTGTGACTTTGAACAAGGTTGGTGGATTTCTTCAGAGGATGGATTTGGCCCGCAAATATGCATTTGGAAAGATGCTTATAATTGGATCTGAGCCACCTTTTAAGGTGAAGGGATTGTGGCTGTTCCGTGGGCCAGAAATCCCTAAATTTGTGATGGAAGAATGCTATGACATGGAGCTCTATGAGTGGACTAAGGTTGACATATCAGATGAAGCTCAGAAGGAGCGTGTGAGTCAGATGATTGAAGATTTTGAACCTTTTGAGGGAGAGACTCTTTTGGATGCCAAGTGCTTCAAGTGA 1407 0.4563 MLGRAEVIRGGKERWIVWNTKTLRPSENRSTSVSAAGLSIEVILKSSKAMALILHTSQGNKNAYKALIAAEYASVEVQYTPHFEFGVSNKTPQFLKMNPLGKVPVLETPHGPVFESNAIARYVARSKDDTTLYGSSLIEYAQVEQWIDFSSFELDSNLQRWYYPRLGYGTYLPPAEENAITALKRGLTALNTHLASNTYLVGHSVTLADIIMITNLYFGFTKILVKSFTSQYPHVQRYFWTLVNHPNFRKILGQVKQAEAVPPLQSAKKPAQPKDEPKKPAQPKDEPKKPAQPKDEPKAEEEAPKPKPKNPLDLLPPSKMVLDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYQDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGPEIPKFVMEECYDMELYEWTKVDISDEAQKERVSQMIEDFEPFEGETLLDAKCFK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00639 468 Gene3D - 129 263 - -
Vifa6g00639 468 Pfam Glutathione S-transferase, C-terminal domain 177 246 IPR004046 -
Vifa6g00639 468 FunFam Elongation factor 1 gamma 129 265 - -
Vifa6g00639 468 CDD GST_N_EF1Bgamma 54 126 - -
Vifa6g00639 468 SFLD Glutathione Transferase (cytosolic) 54 239 IPR040079 -
Vifa6g00639 468 SFLD Main (cytGST) 54 239 - -
Vifa6g00639 468 Gene3D Glutaredoxin 49 123 - -
Vifa6g00639 468 MobiDBLite consensus disorder prediction 271 308 - -
Vifa6g00639 468 Pfam Elongation factor 1 gamma, conserved domain 307 414 IPR001662 GO:0003746|GO:0006414
Vifa6g00639 468 Pfam Glutathione S-transferase, N-terminal domain 51 125 IPR004045 -
Vifa6g00639 468 MobiDBLite consensus disorder prediction 262 316 - -
Vifa6g00639 468 FunFam Elongation factor 1B gamma 50 123 - -
Vifa6g00639 468 SMART EF1G_2 307 415 IPR001662 GO:0003746|GO:0006414
Vifa6g00639 468 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 136 264 IPR010987 -
Vifa6g00639 468 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 50 131 IPR004045 -
Vifa6g00639 468 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 308 468 IPR001662 GO:0003746|GO:0006414
Vifa6g00639 468 SUPERFAMILY GST C-terminal domain-like 122 261 IPR036282 -
Vifa6g00639 468 CDD GST_C_EF1Bgamma_like 139 259 - -
Vifa6g00639 468 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 308 468 IPR036433 GO:0003746|GO:0006414
Vifa6g00639 468 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 50 468 IPR044628 GO:0004364
Vifa6g00639 468 SUPERFAMILY Thioredoxin-like 45 134 IPR036249 -
Vifa6g00639 468 FunFam Elongation factor 1-gamma 1 308 468 - -
Vifa6g00639 468 SUPERFAMILY eEF1-gamma domain 308 468 IPR036433 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00639 Vifa-Chr6 242617748 242619678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00639 50 468 Eukaryotic Initiation Factors Gene Family AT1G57720 73.634 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00639 K03233 - gmx:547637 653.284