Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00634 ATGGAAATTGATCTGAACCATGAAGTGACTGAAATTGAGAAGAATGATGCATTATGCATTATGGAATGTGAAAAAGGTTGCTGTTCTTGTGTTTGTTGTTTGTCCCCTTCCACTTGTTCATCTTCTAGTTCAACTTCACCTCTTGTTTCTTCTTCTTATCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTAATTTCTCTTTCTAAGAAAGGAGATGTTGTGGTTTATCTTCCACAAGGTCATTTGGAGCAAATTGCTTCTTTCTCTCCTTTTAAGCAATTGGAGATACCAAACTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATATACAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAGGCTGAGTTGGCAGGTATGCATATGGAAGGAAAAGAAGTTGAGGAATTAGAAGGAGATGAAGAGGGAGATGGAGGGTCACCTACAAAATCAACTCCTCACATGTTCTGTAAGACACTTACAGTTTCTGATACCAGCACTCATGGCGGCTTCTCTGTGCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTGTTGCTAAAGACTTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCGAGGCGGCATCTACTCACTACTGGCTGGAGCATTTTTGTGAACCAAAAGAATCTTGTCTCTGGTGATGCTGTGCTCTTTCTAAGGGGTGAAAATGGAGAGCTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGGTCTTCCTGAATCGGTTATTGGTAACAAGAACTGTTATCCTAATTTCCTTTCTTCTGTAGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTATAATCCAAGAGCAAGTCATGCCGAATTTGTCGTTCCTCACCAAAAATATGTTAAAAGCATCAAGAATCCAGTGACCATAGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCGCCCGAAAGAAGGTGTAGTAGTGGTATTTTGATTGGAATGAATGATTTGGATCCCTATAGATGGCCTAAATCCAAATGGAGGTGCTTGATGGTCCGATGGGATGAGGATATGGAGACTAATCATCAAGACCGAATATCTCCGTGGGAGATCGATCTTTCGACTCCTCTGCCTCCTCTAAGCATTCAGTCTTCTCCAAGACAGAAGAAACCGCGGACCAGTCTGCAGGTTTCATCGCCCAGTCATCTTATCACTGCAAGAAGCAGTGGAATGATGGGCTTTGAGGAGTCAGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTATGTCGCTATACTATGGATGTGACAAAGGAACCAACCAGCCAGGTTTTGATTTGAGCTCTTCAAGTCATCATCGAAATCTCGCGTCAACTGGAATAGGAAAAGTAGTTACCTCTTCTGAGCTTATGAGTGTTCACCCTTTCGGTTACGCAGGCTTTATGGAAAGTAACAACTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCCCTAACAGGAAAAGTCGATTTCAACGTCGGTGCTTGGGGGAAATCCAATGCAAGTTGCACAAATTTCAACCTTCATCAAGCAAACAAGCACAACTTCCAATCTGCATATTTTCCTTATGCAGATACTCACAAATGTGACCAAGCTAACATGTTTAGCTCAAAACATACCGGTTTCCTAGGAGAGAATGTCGGGTTTAACGCGTCATCGATAGTTGCAGGGAATATTAGAAATGAAGTTGGAAGATCTGAATCTAATCTCTCAATTGAGCATAAGCTGCAGGACAATATTTCTGTTTCTTCTTCATTAAGGACTGCTGATACAAAGGTTCCGATTGATAACAATGTCAACGGAAAGGTAAACTCCTGCAAACTATTCGGGTTTCCTTTGTCTGCGGAAACTAGTTCTCAAAATTTACAGAACACTGCAAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGTTTAGTTGGAAGAGCCGTTGATCTCTCGAGGTTGAGCGGATATATTGATCTTCTGAGTGAACTAGAGAAACTATTTGGAATGGATGGCCTTCTTAGAGACTCTGATAAGGGATGGAGGATCCTCTATACTGACAGTGAGAATGACATAATGGTTGTGGGTGATGATCCATGGCATGAGTTTTGTGATGTGGTATCCAAGATCCATATATATACCAAAGAAGAAGTAGAGAAGATGACATTTGGGATGAACAATGATGATACTCATAGTTGTTTGGAACAGGCACCAGTGGTTATTGAACCTTCTAAGTCTTCCTCAGTTGGTCAGCCAGATTATTCTCCAAAAGTAGTTAGAGTTTGA 2406 0.4144 MEIDLNHEVTEIEKNDALCIMECEKGCCSCVCCLSPSTCSSSSSTSPLVSSSYLELWHACAGPLISLSKKGDVVVYLPQGHLEQIASFSPFKQLEIPNYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMHMEGKEVEELEGDEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESVIGNKNCYPNFLSSVANAISTKSMFHVFYNPRASHAEFVVPHQKYVKSIKNPVTIGTRFKMRFEMDESPERRCSSGILIGMNDLDPYRWPKSKWRCLMVRWDEDMETNHQDRISPWEIDLSTPLPPLSIQSSPRQKKPRTSLQVSSPSHLITARSSGMMGFEESVRSPKVLQGQENSGFMSLYYGCDKGTNQPGFDLSSSSHHRNLASTGIGKVVTSSELMSVHPFGYAGFMESNNFPRVLQGQEICKLKSLTGKVDFNVGAWGKSNASCTNFNLHQANKHNFQSAYFPYADTHKCDQANMFSSKHTGFLGENVGFNASSIVAGNIRNEVGRSESNLSIEHKLQDNISVSSSLRTADTKVPIDNNVNGKVNSCKLFGFPLSAETSSQNLQNTAKRSCTKVHKQGSLVGRAVDLSRLSGYIDLLSELEKLFGMDGLLRDSDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMNNDDTHSCLEQAPVVIEPSKSSSVGQPDYSPKVVRV 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00634 801 Gene3D - 331 402 - -
Vifa6g00634 801 SUPERFAMILY CAD & PB1 domains 675 752 - -
Vifa6g00634 801 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 762 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa6g00634 801 MobiDBLite consensus disorder prediction 145 164 - -
Vifa6g00634 801 SUPERFAMILY DNA-binding pseudobarrel domain 159 278 IPR015300 -
Vifa6g00634 801 MobiDBLite consensus disorder prediction 402 427 - -
Vifa6g00634 801 FunFam Auxin response factor 165 269 - -
Vifa6g00634 801 FunFam Auxin response factor 668 762 - -
Vifa6g00634 801 CDD B3_DNA 165 267 IPR003340 GO:0003677
Vifa6g00634 801 Gene3D - 165 269 IPR015300 -
Vifa6g00634 801 ProSiteProfiles PB1 domain profile. 673 755 IPR000270 GO:0005515
Vifa6g00634 801 Pfam AUX/IAA family 663 757 IPR033389 -
Vifa6g00634 801 Gene3D - 669 762 - -
Vifa6g00634 801 FunFam Auxin response factor 330 403 - -
Vifa6g00634 801 SMART B3_2 167 269 IPR003340 GO:0003677
Vifa6g00634 801 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677
Vifa6g00634 801 Pfam Auxin response factor 293 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa6g00634 801 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00634 Vifa-Chr6 241721297 241725567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00634 49 801 B3 DNA Binding Superfamily AT5G60450 58.763 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa6g00634 AUX_IAA 6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00634 - - gmx:100783513 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01434 1 234648476 234650247 Vifa6g00634 6 241721297 241725567 PCT