Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00632 ATGATGTCCAAACAACCCTTTTCAGTTTCACCTCATTCCAACAACACCATGAGAGCTTCCTCATCAAACCATCTTCAAACCCCAAACCAAAACCCTAATCCAATCTCAAATCCACCTAAGAAAAAAAGAAACCTACCTGGAACACCAGATCCAGATTCAGAAGTGATAGCTATGTCACCAAAATCCTTGATGGCAACGAACCGTTTCTTATGTGAAATCTGCAACAAGGGATTCCAAAGAGACCAGAATTTGCAGCTTCATCGACGCGGACATAATTTGCCATGGAAGCTGAAGCAAAGAGCTAACAGAGATCAAGTTCGGAAGAAGGTTTATGTGTGTCCTGAGAAGAGCTGTGTGCACCATGAGCCTTCTAGAGCTTTAGGAGATTTGACAGGAATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGTAACAAGAAATATGCAGTGCAATCTGATTGGAAAGCTCATAGCAAAATTTGTGGAACCAGAGAATACAAATGTGATTGCGGCACAATTTTCTCCAGGAGGGACAGCTTCATAACACACAGAGCTTTTTGTGAAGTATTGACTGAACAAAGTGCAAAGATATCAATACCAACAGTTCCAAGAAATTTTCATAATGATCATTTCACAAGTATTACTCAAACTCCAAGGATCCCTCAAATTTTTCCTGGCTTTCAGTTTCACTCAGAGTTTGTTGGGTCAGGAACATCATCATCACTATGGCCAGCACTGGAGCAAACAAATTATCATCAGCAACTTCATCCTAATTCTTCTGATGTAATACAACAAACAATGAATATGTTTGGATCGCAGACACAGACGCATACACAGACACAGTGGTTGAATTATAATGGTAATAATAATAATAATAATAGTCTATCTTTGCCGATGTTACATGGAGTAATGAAGCAAGAGGAAGAAGAAAACAAAGATTTGTCTCATAGTGTAATAAGCTCATTGTACTTGAGTGGTAATCAGAATCAAGAAAGAGGATCAGATCACATGTCAGCAGCAGCAACAACAACGTCATTGTTGGAGACAGAATCTCAAATGGGATCTGCAAGGACAGTTATTACTAATGTTAACAACAACAACAACAACAACACACTCTTCAACAATGTGAACCACTTTAGCATTGTTGACAAATTCTACAAACAAGGTCATCATCATGAAAGTGAAGACTTGAATGAGTTGGTGAATTTGGAAGGAAGTAGCAGAACCAATTTTGGAGGTGATCAGTATGCATTACATGACTCATTTGGGACTGTCAAGAATTTGGACCATGTGGTGATGTTGGTAGATAGAGAGACAAGAACAACAACAACAACAAATGGATATTTACATGATTCAAGTTTAATGTCAAAGGACAAAAGCCAAATGGGTTTTACAAGAGACTTTCTTGGGGTTGGAGATGATGATGAGTCAATGAATAGATCAACTTTTTTGCAGCAAGAGCTTGATGACTTTCATGGAATGGGATCATTAGGCAATAATCTGCAGAGCCAGTATCGTGGTGGTGGAAACTATTGCTAA 1560 0.3846 MMSKQPFSVSPHSNNTMRASSSNHLQTPNQNPNPISNPPKKKRNLPGTPDPDSEVIAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANRDQVRKKVYVCPEKSCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCNKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCEVLTEQSAKISIPTVPRNFHNDHFTSITQTPRIPQIFPGFQFHSEFVGSGTSSSLWPALEQTNYHQQLHPNSSDVIQQTMNMFGSQTQTHTQTQWLNYNGNNNNNNSLSLPMLHGVMKQEEEENKDLSHSVISSLYLSGNQNQERGSDHMSAAATTTSLLETESQMGSARTVITNVNNNNNNNTLFNNVNHFSIVDKFYKQGHHHESEDLNELVNLEGSSRTNFGGDQYALHDSFGTVKNLDHVVMLVDRETRTTTTTNGYLHDSSLMSKDKSQMGFTRDFLGVGDDDESMNRSTFLQQELDDFHGMGSLGNNLQSQYRGGGNYC 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00632 519 Gene3D Classic Zinc Finger 123 204 - -
Vifa6g00632 519 MobiDBLite consensus disorder prediction 1 31 - -
Vifa6g00632 519 Gene3D Classic Zinc Finger 48 122 - -
Vifa6g00632 519 SMART c2h2final6 146 166 IPR013087 -
Vifa6g00632 519 SMART c2h2final6 69 91 IPR013087 -
Vifa6g00632 519 SMART c2h2final6 111 141 IPR013087 -
Vifa6g00632 519 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
Vifa6g00632 519 FunFam protein indeterminate-domain 12-like 48 117 - -
Vifa6g00632 519 MobiDBLite consensus disorder prediction 1 55 - -
Vifa6g00632 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 490 IPR031140 -
Vifa6g00632 519 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Vifa6g00632 519 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Vifa6g00632 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00632 Vifa-Chr6 239574367 239576210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00632 27 203 IDZ Gene Family AT3G50700 81.356 4.50e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g00632 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00632 K25870 - gmx:100781896 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01423 1 232682845 232684670 Vifa6g00632 6 239574367 239576210 PCT