Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00625 ATGGCTTCCTCAAACAATTCCATAGCTGAAAACAAAAAAGCCAAAAAACCAGAAACTTCAACACCTACCAGCAAAGTCAAAACGGAAAAAGACGTAGAAAAATCCAGTGAGAAGAAGAACAACAACAACGAGGAGAACAAAAGCAACAAGAGTAAGAAGCTCAAGTTCACCAATGGAAATTCCAAAGAAAAAGAAGAAAACGGAGTAAAACACGAGAACGACGTTGAAGAAGATGGAGGAGAAGAAGAAGCGAAAATGAACGTGTTTCCGATGAGTCGAATCAGGACGATAATCAAAGCAGAAATCAGCGATTTGCGTGTTACTCAGGAAGCTATATTGGCGATTAACAAAGCTGCGGAGAAATTTCTTGAACAATTAGCTTTGGAAGCTTTTGCGTATTGTGCTCAGGATCGGAAGAAGTATCTGAGTTACAATCACTTATCCCATGTTGTTAGTAAGCAAAAAAGATTTGACTTTCTGGCTGATTTTGTTCCCGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGACAATCTCTAGAGGAGATAGAGGCGGTTAG 558 0.3961 MASSNNSIAENKKAKKPETSTPTSKVKTEKDVEKSSEKKNNNNEENKSNKSKKLKFTNGNSKEKEENGVKHENDVEEDGGEEEAKMNVFPMSRIRTIIKAEISDLRVTQEAILAINKAAEKFLEQLALEAFAYCAQDRKKYLSYNHLSHVVSKQKRFDFLADFVPEKVKAEDALRETISRGDRGG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00625 185 MobiDBLite consensus disorder prediction 1 87 - -
Vifa6g00625 185 Gene3D Histone, subunit A 15 166 IPR009072 GO:0046982
Vifa6g00625 185 SUPERFAMILY Histone-fold 43 160 IPR009072 GO:0046982
Vifa6g00625 185 MobiDBLite consensus disorder prediction 11 75 - -
Vifa6g00625 185 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 46 177 - -
Vifa6g00625 185 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 89 151 IPR003958 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00625 76 150 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.333 1.07e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vifa6g00625 CBFD_NFYB_HMF 7.2e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00625 - - lja:Lj3g3v3086110.3 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00625 6 238720143 238722284 Vifa6g00625 6 238720143 238722284 ECH