Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00620 ATGGTCCCGGAAAGATCGCGTCTCTATCCTCCCTGTCTTGCGGAGGACGTCACCCAGAGTAGCAGCATCTTCATTAGGGCTTCAAGCCCACTACCTCTGAAATCAGATTTTTCTATCAACTTAAGATTTAAGCTAAAGATGTTTGATAAGACTCTTACTTATGTGAAAGCTATGTGGTGTTTTAACTGCTTCGGGTTATTCAAGAGACAGAACCCTCAGAAGGATAAGCCTGCTGCCATCTACAATAGTAATCTCTCCCGAGAGCTGTTGTTGGATGATGATGATGATTTTGATGATGAAGGGTCATTCTGTAATGATGAGGTTACTAGCACCACCAGTGGAGATGATAGTGAGGAGCAAAGTCGTCCCAAGCGATCAGAGGATATTTTGGTTTTTAGAGTAGAGAATGGTATGATTTGTAGACAGTTTCCTGTTAAAGAGACTGACAAAGTTTTTCGCACTGAGGATGAAAATGGAAACAAAATGATAAATGAGTATGTTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGTCTCTTCACCGAAGCTCGGTTGATGGAAAACATTATGCAATTAAGGCCTTTCATAAGTCTCATCTACGGAAGCTTCGAGTTGGACCCTCAGAAACTGCCATGACTGATGTTCTACGTGAGGTTTTCATTATGAAAATGATCCAACATCCTAAGATAGTCAATCTCATTGAGGTGATTGATGACCCAGAATCAGATCACTTCTACATGGTTCTTGAATATGTGGAAGACAAATGGGTTTGCGAGGGTTCAGGCCGAGCTTGTAGCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGGGATATAGTTTCTGGGTTAATGTATCTCCATGCTCATAATATAGTTCACGGGGATATCAAGCCTGATAATTTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATGTGCTTCGACGATCACCTGGAACTCCTGTTTTCACCGCACCTGAATGTATATTAGGTCTTACCTACCGAGGTAAAGCCTCGGACACATGGGCTGTAGGAATTACTTTATACTGTATGATATTGGGCGAATACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAGAATAGTCAATAATCCAATATTGCTCCCAAAGGATCTGAATCCGCGATTGAAGAACTTAATAGAAGGACTACTTTCCAAAGACCCAAAACACAGGATAACGCTGGCTGATGTCGCTGCTGATAGCTGGGTTATTGGAAATGATGGGCCGATTCCTGAGTACCCGTGTTGGTGCAAAAGGAAGAACTTGGAGAGGAAAGACAGTGATGAGAGCTAG 1365 0.4227 MVPERSRLYPPCLAEDVTQSSSIFIRASSPLPLKSDFSINLRFKLKMFDKTLTYVKAMWCFNCFGLFKRQNPQKDKPAAIYNSNLSRELLLDDDDDFDDEGSFCNDEVTSTTSGDDSEEQSRPKRSEDILVFRVENGMICRQFPVKETDKVFRTEDENGNKMINEYVREYKIGSGSYGKVSLHRSSVDGKHYAIKAFHKSHLRKLRVGPSETAMTDVLREVFIMKMIQHPKIVNLIEVIDDPESDHFYMVLEYVEDKWVCEGSGRACSLGEETARRYLRDIVSGLMYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDDNDVLRRSPGTPVFTAPECILGLTYRGKASDTWAVGITLYCMILGEYPFLGDTLQDTYDRIVNNPILLPKDLNPRLKNLIEGLLSKDPKHRITLADVAADSWVIGNDGPIPEYPCWCKRKNLERKDSDES 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00620 454 Gene3D Phosphorylase Kinase; domain 1 160 262 - -
Vifa6g00620 454 Pfam Protein kinase domain 166 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00620 454 MobiDBLite consensus disorder prediction 105 126 - -
Vifa6g00620 454 SUPERFAMILY Protein kinase-like (PK-like) 157 439 IPR011009 -
Vifa6g00620 454 CDD STKc_LKB1_CaMKK 172 427 - -
Vifa6g00620 454 FunFam Serine/threonine-protein kinase GRIK2 156 454 - -
Vifa6g00620 454 Gene3D Transferase(Phosphotransferase) domain 1 264 433 - -
Vifa6g00620 454 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 120 429 - -
Vifa6g00620 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Vifa6g00620 454 ProSiteProfiles Protein kinase domain profile. 166 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00620 454 SMART serkin_6 166 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00620 454 FunFam Serine/threonine-protein kinase Ssp1 160 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00620 Vifa-Chr6 237880172 237884469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00620 161 434 CBL-interacting serine-threonine protein kinases AT5G35410 31.752 1.87e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vifa6g00620 Pkinase 2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00620 K00908 - gmx:100789178 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00620 6 237880172 237884469 Vifa6g00620 6 237880172 237884469 ECH