Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00617 ATGATTTCTGAAGAAAATAAAACTGTCACTGATGAAGATCATGAGGCTTCATCTTGCAGAAGAACCGCTTCTCTTCCTCTTGCTCACAAGGATAACGATGGTTCGACGGGGATAATTGAAGAAATCTCACATGTTCCTCCGCGGAAGAAACAGAATCTTCTGTTGGAAATACCATCAAGAGCACGAGAAGAGTGTTCACAAGATTATGTGGCTATCAAAGTTCCGATGACACCGAGTCCTACTCCTAAGAGAGTGAATTTTCTGATGACTTCTCGGTCGGTTGATGCTCCCGTAAATAATTCTCCTGGATCCGCAACATCAAGAGGCAAATCATCGTTAAGAAACATGCTACCGAAATTGAGCTTCAGGAGTAGGACACCGGCAGATAATGACAAGATGAACATATCAACTCCGGAGGTTTCCTCTTCAGGTCATCGAGAAAAGCCTTTGATCTCGAGATCACTGTCACTTAGTAAGATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTAGATGAAATTGGAAATTCGAATACCGAATCCACTCATGGTGGAAATATGAGTTTTATTTTGCAGAAAAGAGAGACTCGACTGAAGATAGCGCGCTCTCTTTCCATGCCTGCCAACAACAAGAAGGATAAAAGCCTAAAGAGGATGGATTCGTTTTTTCGCGTTGTTTCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGAGCACGTCTCCGACAAAGGATACTGAAATCGAAGATGCTGATGATGGCCAAGATATAGCTCAAGAGGAGGCAGTGTGTAGAATTTGTTTGGTTGAATTATGTGAAGGAGGTGAGACATTCAAGTTGGAATGTAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAATAGAACTTGTGATGTCTGCATGGAGGATGTTAGAAACCTTCCTGTCACTCTGTTACGGATTCAAAGTGTTCGAAATCGAATTACTGGAGCAAGTAGATCTCAGCTCGAAGATGTAAACGGGGTTTGGCAGGAAGTTCCAGTGCTTGTCATTGTTAGCATGTTGGCATATTTCTGTTTTCTTGAGCAACTGTTGGTTACAAAAATGGGAACAGGTGCAATTGCCATATCCCTTCCATTTTCCTGTGTACTAGGCCTGCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTATCAATCCTTCTTGCAACATTTGCTGGTTTTGGCGTGGTAATGAGTGTAAGTTCTTTCCTTGTTGAGCTTTTTAGATGGAGAAGGAGACAGCAGGCTTCATCAGAGCTATTCCATGGCCCTCTACCGATAACACAAGTAGGACAACAACCTCGGCCTGCAAACACGCCACGATCAGGTGAATCCAACCACAATCAATCTGTAGTGCAAAATCAACAAGACTCAAATCAAAGTTGA 1542 0.4228 MISEENKTVTDEDHEASSCRRTASLPLAHKDNDGSTGIIEEISHVPPRKKQNLLLEIPSRAREECSQDYVAIKVPMTPSPTPKRVNFLMTSRSVDAPVNNSPGSATSRGKSSLRNMLPKLSFRSRTPADNDKMNISTPEVSSSGHREKPLISRSLSLSKIFTPRMKRTSSLPLDEIGNSNTESTHGGNMSFILQKRETRLKIARSLSMPANNKKDKSLKRMDSFFRVVSSTPRVKEGNELLSTSPTKDTEIEDADDGQDIAQEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCMEDVRNLPVTLLRIQSVRNRITGASRSQLEDVNGVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSVSSFLVELFRWRRRQQASSELFHGPLPITQVGQQPRPANTPRSGESNHNQSVVQNQQDSNQS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00617 513 MobiDBLite consensus disorder prediction 1 37 - -
Vifa6g00617 513 SUPERFAMILY RING/U-box 263 316 - -
Vifa6g00617 513 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Vifa6g00617 513 MobiDBLite consensus disorder prediction 123 148 - -
Vifa6g00617 513 SMART ringv_2 266 315 IPR011016 GO:0008270
Vifa6g00617 513 MobiDBLite consensus disorder prediction 1 19 - -
Vifa6g00617 513 CDD RING_CH-C4HC3_MARCH 267 314 - -
Vifa6g00617 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Vifa6g00617 513 MobiDBLite consensus disorder prediction 477 513 - -
Vifa6g00617 513 MobiDBLite consensus disorder prediction 483 513 - -
Vifa6g00617 513 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Vifa6g00617 513 PANTHER OS02G0165000 PROTEIN 22 470 - -
Vifa6g00617 513 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00617 Vifa-Chr6 237606652 237609295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00617 223 321 C3H Transcription Factor Family AT2G37950 36.000 9.00e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00617 - - gmx:100788108 708.753