Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00616 ATGATTTCTGAAGAAAATAAAACTGTCACTGATGAAGATCATGAGGCTTCATCTTGCAGAAGAACCGCTTCTCTTCCTCTTGCTCACAAGGATAACGATGGTTCGACGGGGATAATTGAAGAAATCTCACATGTTCCTCCGCGGAAGAAACAGAATCTTCTGTTGGAAATACCATCAAGAGCACGAGAAGAGTGTTCACAAGATTATGTGGCTATCAAAGTTCCGATGACACCGAGTCCTACTCCTAAGAGAGTGAATTTTCTGATGACTTCTCGGTCGGTTGATGCTCCCGTAAATAATTCTCCTGGATCCGCAACATCAAGAGGCAAATCATCGTTAAGAAACATGCTACCGAAATTGAGCTTCAGGAGTAGGACACCGGCAGATAATGACAAGATGAACATATCAACTCCGGAGGTTTCCTCTTCAGGTCATCGAGAAAAGCCTTTGATCTCGAGATCACTGTCACTTAGTAAGATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTAGATGAAATTGGAAATTCGAATACCGAATCCACTCATGGTGGAAATATGAGTAAAAGAGAGACTCGACTGAAGATAGCGCGCTCTCTTTCCATGCCTGCCAACAACAAGAAGGATAAAAGCCTAAAGAGGATGGATTCGTTTTTTCGCGTTGTTTCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGAGCACGTCTCCGACAAAGGATACTGAAATCGAAGATGCTGATGATGGCCAAGATATAGCTCAAGAGGAGGCAGTGTGTAGAATTTGTTTGGTTGAATTATGTGAAGGAGGTGAGACATTCAAGTTGGAATGTAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAATAGAACTTGTGATGTCTGCATGGAGGATGTTAGAAACCTTCCTGTCACTCTGTTACGGATTCAAAGTGTTCGAAATCGAATTACTGGAGCAAGTAGATCTCAGCTCGAAGATGTAAACGGGGTTTGGCAGGAAGTTCCAGTGCTTGTCATTGTTAGCATGTTGGCATATTTCTGTTTTCTTGAGCAACTGTTGGTTACAAAAATGGGAACAGGTGCAATTGCCATATCCCTTCCATTTTCCTGTGTACTAGGCCTGCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTATCAATCCTTCTTGCAACATTTGCTGGTTTTGGCGTGGTAATGAGTGTAAGTTCTTTCCTTGTTGAGCTTTTTAGATGGAGAAGGAGACAGCAGGCTTCATCAGAGCTATTCCATGGCCCTCTACCGATAACACAAGTAGGACAACAACCTCGGCCTGCAAACACGCCACGATCAGGTGAATCCAACCACAATCAATCTGTAGTGCAAAATCAACAAGACTCAAATCAAAGTTGA 1530 0.4242 MISEENKTVTDEDHEASSCRRTASLPLAHKDNDGSTGIIEEISHVPPRKKQNLLLEIPSRAREECSQDYVAIKVPMTPSPTPKRVNFLMTSRSVDAPVNNSPGSATSRGKSSLRNMLPKLSFRSRTPADNDKMNISTPEVSSSGHREKPLISRSLSLSKIFTPRMKRTSSLPLDEIGNSNTESTHGGNMSKRETRLKIARSLSMPANNKKDKSLKRMDSFFRVVSSTPRVKEGNELLSTSPTKDTEIEDADDGQDIAQEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCMEDVRNLPVTLLRIQSVRNRITGASRSQLEDVNGVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSVSSFLVELFRWRRRQQASSELFHGPLPITQVGQQPRPANTPRSGESNHNQSVVQNQQDSNQS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00616 509 MobiDBLite consensus disorder prediction 1 37 - -
Vifa6g00616 509 MobiDBLite consensus disorder prediction 172 187 - -
Vifa6g00616 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
Vifa6g00616 509 MobiDBLite consensus disorder prediction 123 148 - -
Vifa6g00616 509 MobiDBLite consensus disorder prediction 170 192 - -
Vifa6g00616 509 SUPERFAMILY RING/U-box 259 312 - -
Vifa6g00616 509 MobiDBLite consensus disorder prediction 1 19 - -
Vifa6g00616 509 CDD RING_CH-C4HC3_MARCH 263 310 - -
Vifa6g00616 509 MobiDBLite consensus disorder prediction 473 509 - -
Vifa6g00616 509 PANTHER OS02G0165000 PROTEIN 22 466 - -
Vifa6g00616 509 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Vifa6g00616 509 MobiDBLite consensus disorder prediction 479 509 - -
Vifa6g00616 509 SMART ringv_2 262 311 IPR011016 GO:0008270
Vifa6g00616 509 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Vifa6g00616 509 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00616 Vifa-Chr6 237606652 237609295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00616 219 317 C3H Transcription Factor Family AT2G37950 36.000 9.89e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00616 - - gmx:100788108 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01401 1 227494187 227497143 Vifa6g00616 6 237606652 237609295 PCT