Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00615 ATGATTTCTGAAGAAAATAAAACTGTCACTGATGAAGATCATGAGGCTTCATCTTGCAGAAGAACCGCTTCTCTTCCTCTTGCTCACAAGGATAACGATGGTTCGACGGGGATAATTGAAGAAATCTCACATGTTCCTCCGCGGAAGAAACAGAATCTTCTGTTGGAAATACCATCAAGAGCACGAGAAGAGTGTTCACAAGATTATGTGGCTATCAAAGTTCCGATGACACCGAGTCCTACTCCTAAGAGAGTGAATTTTCTGATGACTTCTCGGTCGGTTGATGCTCCCGTAAATAATTCTCCTGGATCCGCAACATCAAGAGGCAAATCATCGTTAAGAAACATGCTACCGAAATTGAGCTTCAGGAGTAGGACACCGGCAGATAATGACAAGATGAACATATCAACTCCGGAGGTTTCCTCTTCAGGTCATCGAGAAAAGCCTTTGATCTCGAGATCACTGTCACTTAGTAAGATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTAGATGAAATTGGAAATTCGAATACCGAATCCACTCATGGTGGAAATATGAGTAAAAGAGAGACTCGACTGAAGATAGCGCGCTCTCTTTCCATGCCTGCCAACAACAAGAAGGATAAAAGCCTAAAGAGGATGGATTCGTTTTTTCGCGTTGTTTCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGAGCACGTCTCCGACAAAGGATACTGAAATCGAAGATGCTGATGATGGCCAAGATATAGCTCAAGAGGAGGCAGTGTGTAGAATTTGTTTGGTTGAATTATGTGAAGGAGGTGAGACATTCAAGTTGGAATGTAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAATAGAACTTGTGATGTCTGCATGGAGGATGTTAGAAACCTTCCTGTCACTCTGTTACGGATTCAAAGTGTTCGAAATCGAATTACTGGAGCAAGTAGATCTCAGCTCGAAGATGTAAACGGGTACAGGGTTTGGCAGGAAGTTCCAGTGCTTGTCATTGTTAGCATGTTGGCATATTTCTGTTTTCTTGAGCAACTGTTGGTTACAAAAATGGGAACAGGTGCAATTGCCATATCCCTTCCATTTTCCTGTGTACTAGGCCTGCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTATCAATCCTTCTTGCAACATTTGCTGGTTTTGGCGTGGTAATGAGTGTAAGTTCTTTCCTTGTTGAGCTTTTTAGATGGAGAAGGAGACAGCAGGCTTCATCAGAGCTATTCCATGGCCCTCTACCGATAACACAAGTAGGACAACAACCTCGGCCTGCAAACACGCCACGATCAGGTGAATCCAACCACAATCAATCTGTAGTGCAAAATCAACAAGACTCAAATCAAAGTTGA 1536 0.4245 MISEENKTVTDEDHEASSCRRTASLPLAHKDNDGSTGIIEEISHVPPRKKQNLLLEIPSRAREECSQDYVAIKVPMTPSPTPKRVNFLMTSRSVDAPVNNSPGSATSRGKSSLRNMLPKLSFRSRTPADNDKMNISTPEVSSSGHREKPLISRSLSLSKIFTPRMKRTSSLPLDEIGNSNTESTHGGNMSKRETRLKIARSLSMPANNKKDKSLKRMDSFFRVVSSTPRVKEGNELLSTSPTKDTEIEDADDGQDIAQEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCMEDVRNLPVTLLRIQSVRNRITGASRSQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSVSSFLVELFRWRRRQQASSELFHGPLPITQVGQQPRPANTPRSGESNHNQSVVQNQQDSNQS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00615 511 MobiDBLite consensus disorder prediction 1 37 - -
Vifa6g00615 511 PANTHER OS02G0165000 PROTEIN 22 468 - -
Vifa6g00615 511 MobiDBLite consensus disorder prediction 475 511 - -
Vifa6g00615 511 MobiDBLite consensus disorder prediction 172 187 - -
Vifa6g00615 511 MobiDBLite consensus disorder prediction 481 511 - -
Vifa6g00615 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
Vifa6g00615 511 MobiDBLite consensus disorder prediction 123 148 - -
Vifa6g00615 511 MobiDBLite consensus disorder prediction 170 192 - -
Vifa6g00615 511 MobiDBLite consensus disorder prediction 1 19 - -
Vifa6g00615 511 CDD RING_CH-C4HC3_MARCH 263 310 - -
Vifa6g00615 511 SUPERFAMILY RING/U-box 259 312 - -
Vifa6g00615 511 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Vifa6g00615 511 SMART ringv_2 262 311 IPR011016 GO:0008270
Vifa6g00615 511 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Vifa6g00615 511 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00615 Vifa-Chr6 237606652 237609295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00615 219 317 C3H Transcription Factor Family AT2G37950 36.000 1.00e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00615 - - gmx:100788108 714.146