Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00600 ATGGACTCAACGGAAGATTTACACTTCTTATTAACAGCGCAACGCCGCGAACTCACGGCGGCGGAATCCATGGAATCCGATCTCGACTTCGCCTTCCATCTCCAGCTACAGGAAGCCCTCGCGGCTTCCCTCACTGATCATCCCTCCTCCTCCATGGACGCTATGCTCGTAGAACCTCCCCTCGACGATGGCGACGTTTTCAAAGCACCGTCTCTGCAATTGGAAGAGCTCGCTAGAATGGAAATCGAGATGAACGATAGAGAACAGAGCGAGAGAGTAATGCGCGAGGCGAAGGTTGATCTCAACCGTCTGATTCATGATCAGAAAATGGCGTCGGAGATTTTTAACTTTCCGGAAGAGGATTGGGATGAATGGGGCGATAATTTCGAGAAACCGTTCGGCGAGGGGAGTTCGAGTTCGTCGGGGTTGAAGAGTGGTGGTATCGATGAAGGTGCGGTTGTTAGGGTTTATTTTAAGGGCTTAGTGCGTGAAGAGACTGTGAGAGTTTCGAAATCTTTGGTTGGGAATGGAACTAGTAAAATTGCTGCGGAGCTTAAGGCTTTGATTGAAGCTTTCAATGCTGTTATTGCTTTGGATTTGAAGCGTGTTGTTTATTTTGGGGATTACCATCCACTTTTCCAATTTTTAAGTGGAAAATGGCCTGCAAGACAGCGGAAGATTGCTACGTTAGTTAATCAGGTGAATCTACTCCAAAGAAAATTTGAATACTGCAGTCCAAGGCTTGTGGCGAGAAATGATCTGAAGTTTGCATTAAAGCTCGCAAGAGATGCAATTGATTCTCAGTCCAATAGGCCTGCTGAATCTAGCAGTTTAAACAGTCTGAATGAAACTTGTGTCATTTGTATGGAGGATACTGATCCTAGTCAAATTTTTTCAGTTGATGACTGTCAACACAGGTATTGCTTTTCTTGCATGAAGCAATATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAGTGCCCTCACGATGGATGCAAGAATGAACTTCTAATTGAGAGTTGCCGGAAATTCTTGACTTCTAAGTTAGTTGAAACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCGCCTACTGAGAAAATCTACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAAGTGAAGTTTTAGATTACTCTCAAAGTCTTATGGGCTCTGAACATTCATTACCCAAGAAATGCGTGAAATGTCATGGTCTTTTCTGTTTCGGCTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTATACTTACAAAAGGTTGAATCCTAATTCTCCAGCAGAAGATATTAGGTTGAAGTCTCTGGCATCAAGGAGTCTCTGGAGACAGTGTGTGAAGTGTAGCCATATGATTGAACTTGCTGAAGGCTGCTACCATATGACTTGCAGATGTAGTTACGAATTTTGCTATAAATGTGGAGCTGAGTGGAAGGACAAAAAGGCAACATGTTCTTGTCCACTTTGGGAAGAGGAAAATATTTGGTTAGAAGATCATCATGTCGAGGAATATGAAGAAGACTCTGATTTTGAAGATGATTTTTATTAG 1572 0.4319 MDSTEDLHFLLTAQRRELTAAESMESDLDFAFHLQLQEALAASLTDHPSSSMDAMLVEPPLDDGDVFKAPSLQLEELARMEIEMNDREQSERVMREAKVDLNRLIHDQKMASEIFNFPEEDWDEWGDNFEKPFGEGSSSSSGLKSGGIDEGAVVRVYFKGLVREETVRVSKSLVGNGTSKIAAELKALIEAFNAVIALDLKRVVYFGDYHPLFQFLSGKWPARQRKIATLVNQVNLLQRKFEYCSPRLVARNDLKFALKLARDAIDSQSNRPAESSSLNSLNETCVICMEDTDPSQIFSVDDCQHRYCFSCMKQYVEVKLLHGMVPKCPHDGCKNELLIESCRKFLTSKLVETMQQRKLEASIPPTEKIYCPYPRCSALMSKSEVLDYSQSLMGSEHSLPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNSPAEDIRLKSLASRSLWRQCVKCSHMIELAEGCYHMTCRCSYEFCYKCGAEWKDKKATCSCPLWEEENIWLEDHHVEEYEEDSDFEDDFY 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00600 523 Pfam Reverse transcriptase-like 170 264 IPR002156 GO:0003676|GO:0004523
Vifa6g00600 523 SUPERFAMILY RING/U-box 439 501 - -
Vifa6g00600 523 Gene3D - 134 273 IPR036397 GO:0003676
Vifa6g00600 523 FunFam RBR-type E3 ubiquitin transferase 422 522 - -
Vifa6g00600 523 ProSitePatterns Zinc finger RING-type signature. 303 312 IPR017907 -
Vifa6g00600 523 FunFam RBR-type E3 ubiquitin transferase 280 365 - -
Vifa6g00600 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 367 IPR013083 -
Vifa6g00600 523 SUPERFAMILY RING/U-box 283 364 - -
Vifa6g00600 523 Coils Coil 87 107 - -
Vifa6g00600 523 CDD BRcat_RBR_unk 365 424 - -
Vifa6g00600 523 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 253 502 IPR031127 GO:0004842|GO:0016567
Vifa6g00600 523 ProSiteProfiles Zinc finger RING-type profile. 285 331 IPR001841 -
Vifa6g00600 523 Gene3D - 422 521 - -
Vifa6g00600 523 SMART ibrneu5 437 494 IPR002867 GO:0008270
Vifa6g00600 523 SMART ibrneu5 352 424 IPR002867 GO:0008270
Vifa6g00600 523 CDD Rcat_RBR_unk 450 485 - -
Vifa6g00600 523 ProSiteProfiles TRIAD supradomain profile. 281 504 IPR044066 -
Vifa6g00600 523 Pfam IBR domain, a half RING-finger domain 354 424 IPR002867 GO:0008270
Vifa6g00600 523 Pfam IBR domain, a half RING-finger domain 440 492 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00600 Vifa-Chr6 232907877 232914440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00600 155 483 C3H Transcription Factor Family AT2G19610 33.240 2.58e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00600 - - aprc:113858620 736.102