Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00599 ATGGAAAGTACTACTAGTGACACATGTTCTGTTCCATTTTTATATAACTCTTCAATTTCATCTAATTCACCTCCACAAGCTGTTGTTGTTATGAGCCCTTGTGCTGCTTGCAAGATTTTGAGGAGAAGATGTTCGGCTGAAAAATGTGTTTTGGCTCCTTATTTTCCTCCTACCCATCCGGCTAAGTTTACCATTGCTCATAGAGTCTTTGGTGCTAGCAACATCATCAAATTCTTACAGGAACTACCTGAGGCGCAAAGAGCCGATGCAGTTACGAGCATGGTTTATGAGGCGAGTGCGAGAATTAGAGATCCTGTTTATGGTTGTGCTGGAGCAATTTGCCAACTTCAAAAGCAAGTGAATGAGCTTCAAGCACAATTGGCCAAATCACAAGCGGAAGTTGTAAACATGCAACTTCAACAAGCTAATCTAGTGGCTTTATTTTGCATGTCACAAAGTGAACAAGGGTCACCACAACAATCTATGGATGATTTCATTCAAAGTCCTCTAGAGAGTAGTGGCAATCAAATTGGTTTGAGTTTTCTTGAGGAGAACAATAGTCCGAGTTCATTGTGGGAGCCACTTTGGACATGA 594 0.4125 MESTTSDTCSVPFLYNSSISSNSPPQAVVVMSPCAACKILRRRCSAEKCVLAPYFPPTHPAKFTIAHRVFGASNIIKFLQELPEAQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAEVVNMQLQQANLVALFCMSQSEQGSPQQSMDDFIQSPLESSGNQIGLSFLEENNSPSSLWEPLWT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00599 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 161 - -
Vifa6g00599 197 Pfam Lateral organ boundaries (LOB) domain 33 131 IPR004883 -
Vifa6g00599 197 ProSiteProfiles LOB domain profile. 32 134 IPR004883 -
Vifa6g00599 197 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00599 Vifa-Chr6 232439878 232440651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00599 29 197 AS2 family AT2G28500 66.667 8.81e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa6g00599 LOB 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00599 - - ccaj:109798760 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00599 6 232439878 232440651 Vifa6g00599 6 232439878 232440651 ECH