Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00594 ATGGATTTGGTTTTGTTGGTGTTTGTGTTTGGCAATGAGGACGAGGAAAGGATTTACACTACTGAGATTATATTTGTTGTTTCGCGTCTTCACAACAAAGGCATTGTGCATCAGGATCTTAAACCTGAAAACATACTCATGGATTCTCATGGCCATGTGATATTAACTGATTTTGGAATGTCGGAAGAAATTGAGGAATTCGAGAGATCTAACTCTATGTGCCATAATAAGGATGCAGATTGGTGGAGTGTTGGTGTTCTCTTGTATGAAATGATAACCTCAAAGGCACCATTTATACATAATAACAGAAACAAGCTATATGAGAAAATTATCAAAAGACAAAATCAAACTTTCTCCCTACCTTACAGTGAAGCTTATTCTTTGCTCAAAGGATTGCTGCAAAAGGATCCATCTACAAGGTTAGGCAGCGGGCCAGATGGAGATGAACATATCAAAAATCATAAGTGGTTCAGGACAATTAATTGGAACAAATTGGAAGCAAGAGAACTACAACCAAAGTTTAAACCATCTGATGTGTTTGGAAAAGATTGCACAACTAATTTTGATCGATGCTGGACGACAATGCCGCTTAAGGACTCTCTGGCATCAACTCCTACAGCAGGTGACCATTTTCAGGGCCATACTTATGTTTCACCAAATCCTTGGCTTTCTTCTAGATAA 681 0.3833 MDLVLLVFVFGNEDEERIYTTEIIFVVSRLHNKGIVHQDLKPENILMDSHGHVILTDFGMSEEIEEFERSNSMCHNKDADWWSVGVLLYEMITSKAPFIHNNRNKLYEKIIKRQNQTFSLPYSEAYSLLKGLLQKDPSTRLGSGPDGDEHIKNHKWFRTINWNKLEARELQPKFKPSDVFGKDCTTNFDRCWTTMPLKDSLASTPTAGDHFQGHTYVSPNPWLSSR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00594 226 ProSiteProfiles AGC-kinase C-terminal domain profile. 158 226 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa6g00594 226 Gene3D Phosphorylase Kinase; domain 1 179 194 - -
Vifa6g00594 226 PANTHER RIBOSOMAL PROTEIN S6 KINASE 12 220 - -
Vifa6g00594 226 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00594 226 SUPERFAMILY Protein kinase-like (PK-like) 12 216 IPR011009 -
Vifa6g00594 226 Gene3D Transferase(Phosphotransferase) domain 1 13 177 - -
Vifa6g00594 226 ProSitePatterns Serine/Threonine protein kinases active-site signature. 35 47 IPR008271 GO:0004672|GO:0006468
Vifa6g00594 226 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00594 226 Pfam Protein kinase domain 13 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00594 226 SMART pkinase_C_6 158 218 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00594 Vifa-Chr6 232056306 232057789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00594 13 219 AGC Kinase Gene Family AT3G08720 54.667 5.68e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vifa6g00594 Pkinase 7.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00594 K04688 - gmx:100798259 329.331