Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00591 ATGGATTTGGTAACAACTGTCAAGGACAAGTTAACATATTTCCGTATAAAAGAGTTAAAAGATGTGCTGACACAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGACCTCGTTGATCGGATATTATCCATTCTCTCAGATGAGCAAGTTTCCAAAATGTGGGCTAAGAAGAATGCTGTTGGGAAAGAACAGGTGGCAAAATTAGTGGACGACACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCATCAAAGGGCCAGGTTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTTGATGATTCCCTTCAAATTCAGTCAGCTGCAACTATAACTACAACTACAACTACAAAGATTCGCTGTCTCTGTGGAAGTGCATTGGAAACAGAAGATTTGATCAAGTGCGATGATGCAAGATGCCAAGTATGGCAACACATCAGTTGCGTTATTATTCCGGAGAAACCTATGGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTATGTCGACTCAGTCGTGCAGACCCGTTTTGGGTTTCAATATCTCATCCTTTGTTACCTGTAAAGTTGACCACAACAAGTATTCCAACTGATGGTTCCAACCCAGTGCAGTGCGTGGAGAGAACATTTCAATTCACAAGAGCAGACAAAGACATGGTATCAAAACAAGAGTTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTAGCGGTCAATGGCCTTCCTGTTCGGACAACTAACAGACCCGGTTCACAATTGCTCGGGACTAATGGTCGTGATGATGGTCCAATTATTACAGCGCATACAAAAGATGGAATCAATAAGATTTCCTTAACAGTATGTGATGCTCGCATTTTTTGTTTAGGTGTTCGCATTGTAAGAAGGCGTAATTTGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGACGGTGAGCATTTTGAAGATGCTCTTGCACGTGTTTGTCGTTGTGTTGGGGGTGGAAATGCGGCTGACAATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTTGGCATTAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGTTCAAGAAAATGGCAATGCCCTATATGTCTCAAAAACTATGCACTGGAGAATATCATCATTGATCCTTATTTCAATCGCATCACTTCTCTGATGATTAATTGCGGTGAAGATGTTACAGAGGTTGAGGTCAAGCCTGATGGCTCTTGGCGTGTTAAGACAAAGAGTGAAAGTGAACGTCTGGATTTAGGGAATCTTGGCCGATGGCACTTTCCTGATGGATCCCTCTGTGCTTCTACTGATGGAGATATCAAAAGAGTAGAATCATTGAAGCAAGTAAAACAGGAAGGTTTTTCAGACGGACCTGCAGGTTTAAAACTTGGCATTAGGAAGAATCGCAATGGAATTTGGGAAGTTAGTAAGCCAGAGGGCACAAACACCTCTTCTGGTCATAGATTAAAAGATGTTTTTGGAAATCCTGATCATGTTGTTATTCCAATGAGTAGCAGTGGCACCGGAAGTGGTCGGGATGGTGATGATCCCAGTGTTAACCAGGGTGGCGGCGGGCATATTGATTATTCTACTACCAATGGAGTTGAGATGGATTCTCTCTCTCTCGATAATGTTGATTTACCTTGTGGATATACTGCACATAACACATCAGCTCAGATCGGTGGTGCAGAAGTAATTATTCTTAGCGATTCCGAAGAGGACAACGATATATTGATGACTCCTGCAATTGCAACTAACAACAACATAAATGATACTGCGGATGGTTACTCCATGCCACCGCCTGGAATTGTAGACCCATATGCCGAAGATCAGAATCTCGGTGGAAATTCATGCTTGGGCCTTTTTCCTAATGAAGATGATTTTGGGATGTCTTCCTTGTGGTCATTGCCATCTGCAACTCAGACTGGTGCAGGATTCCAATTATTTGGTTCTGATGCAGATGTCTCTGATGCATTGGTCCATTTGCAGCATGGTCCTATTAATTGCACTTCATCACTGAATAGTTATCCATTGGCTCCCGAAACTGCTTTGGGATCTAGTAGCCTCTTACAAGATTCTTCTGCTGGTCGGTCTGATGCTGACTTAAACGGTGGTTTGGTCGACAACCCATTGGCATTTGCTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGGCGAGTCATCTGTGCAGAATGAATTGAGAGATCAAGGAAATGTCTCCAACGGTGTCTGCACTGAAGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGCCGGCAGTAATGGCGACGCTTCCACTCAAAATGGATTGAATTCTAGACATCAAGTCTCAGCCAGAGACAGCAGCACTAATACTTTAGCTGATACTGCTTCTTTGCTTCTTGGTATTAATGATGTACGATCTGACAAAGCAAGTAGACAAAGGTCGGGTAGCCCTTTCACATTTCCTCGGCAAAAACGTTCTGTAAGGCCCCGCCTGTACCTTTCTATTGATGATTCAGATTCGGAATAA 2670 0.4285 MDLVTTVKDKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSKMWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQVVSDSSNVKVKAEVDDSLQIQSAATITTTTTTKIRCLCGSALETEDLIKCDDARCQVWQHISCVIIPEKPMEGIPPVPDKFYCELCRLSRADPFWVSISHPLLPVKLTTTSIPTDGSNPVQCVERTFQFTRADKDMVSKQEFDVEAWCMLLNDKVPFRMQWPQYTDLAVNGLPVRTTNRPGSQLLGTNGRDDGPIITAHTKDGINKISLTVCDARIFCLGVRIVRRRNLQQILNLIPKESDGEHFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFGINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSLMINCGEDVTEVEVKPDGSWRVKTKSESERLDLGNLGRWHFPDGSLCASTDGDIKRVESLKQVKQEGFSDGPAGLKLGIRKNRNGIWEVSKPEGTNTSSGHRLKDVFGNPDHVVIPMSSSGTGSGRDGDDPSVNQGGGGHIDYSTTNGVEMDSLSLDNVDLPCGYTAHNTSAQIGGAEVIILSDSEEDNDILMTPAIATNNNINDTADGYSMPPPGIVDPYAEDQNLGGNSCLGLFPNEDDFGMSSLWSLPSATQTGAGFQLFGSDADVSDALVHLQHGPINCTSSLNSYPLAPETALGSSSLLQDSSAGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPGESSVQNELRDQGNVSNGVCTEDWISLSLGGGAAGSNGDASTQNGLNSRHQVSARDSSTNTLADTASLLLGINDVRSDKASRQRSGSPFTFPRQKRSVRPRLYLSIDDSDSE 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00591 889 CDD SP-RING_Siz-like 370 419 IPR031141 -
Vifa6g00591 889 MobiDBLite consensus disorder prediction 524 538 - -
Vifa6g00591 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 181 IPR013083 -
Vifa6g00591 889 Gene3D SAP domain 1 62 IPR036361 -
Vifa6g00591 889 Pfam MIZ/SP-RING zinc finger 369 417 IPR004181 GO:0008270
Vifa6g00591 889 FunFam E3 SUMO-protein ligase SIZ2 343 457 - -
Vifa6g00591 889 SUPERFAMILY SAP domain 1 64 IPR036361 -
Vifa6g00591 889 Pfam PHD-finger 124 176 IPR019787 -
Vifa6g00591 889 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 671 - -
Vifa6g00591 889 SMART sap_9 11 45 IPR003034 -
Vifa6g00591 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 457 IPR013083 -
Vifa6g00591 889 Pfam SAP domain 14 42 IPR003034 -
Vifa6g00591 889 MobiDBLite consensus disorder prediction 812 836 - -
Vifa6g00591 889 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Vifa6g00591 889 MobiDBLite consensus disorder prediction 550 564 - -
Vifa6g00591 889 ProSitePatterns Zinc finger PHD-type signature. 125 175 IPR019786 -
Vifa6g00591 889 SUPERFAMILY FYVE/PHD zinc finger 118 179 IPR011011 -
Vifa6g00591 889 MobiDBLite consensus disorder prediction 523 575 - -
Vifa6g00591 889 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Vifa6g00591 889 ProSiteProfiles Zinc finger SP-RING-type profile. 356 439 IPR004181 GO:0008270
Vifa6g00591 889 SMART PHD_3 124 176 IPR001965 -
Vifa6g00591 889 MobiDBLite consensus disorder prediction 809 836 - -
Vifa6g00591 889 CDD PHD_Bye1p_SIZ1_like 124 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00591 Vifa-Chr6 231636081 231645425 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa6g00591 PHD 3.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00591 - - gmx:100793735 1471.83