Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00585 ATGGCTATGGCTGTGGCTCATCATAGAGAAAGTAGTAGCAGTGGTGGAAGCATTGATAAGCATCTTGATTCTGGGAAATATGTTAGGTACACTTCTGAACAAGTTGAGGCTTTGGAAAGGGTTTATGCTGAGTGTCCTAAGCCTAGTTCCATGAGAAGACAACAATTGATTAGAGAGTGTCATATTCTTTCCAACATTGAACCTAAACAAATCAAGGTTTGGTTCCAAAATAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCAAGACTTCAGACTGTGAATAGAAAGTTGTCTGCAATGAACAAGTTGTTGATGGAAGAAAATGATAGGTTGCAGAAACAAGTTTCACAGCTTGTGTGTGAGAATGGATTTATGAGGCAGCAGTTGCATACTCCATCAGCAGCAGCAACCACTGATGCGAGTTGTGATTCGGTTGTTACTACTCCTCAGAATTCCAAGAGTGATGCTAATAACCCTGCTGGACTCCTATCAATTGCAGAGGAGACTTTGACTGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCGATTTCACAAAGTTGTAGTGGAGTGGCAGCTCGAGCTTGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTTTATCTTGGTTTCGGGAGTGTCGGAACCTTGAAGTTTTCACAATGTTTCCTGCCGGAAACGGAGGAACCATTGAGCTTATTTACACACAGACATATGCTCCAACGACGCTGGCTCCTGCCCGGGATTTCTGGACTCTTAGATACACTACAAGTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTATCCGGTTCCGGCACTGGTCCTAATCCAGCTGCTACTGCTCAGTTTGTAAGAGGTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGATGGTGGAGGTTCAATTATCCACATTGTAGACCACCTAAATCTTGAGCCTTGGAGTGTGCCAGAAGTGCTACGACCGCTTTATGAATCACCAAAAGTTGTGGCTCAAAAAATGACCATTGCGGCACTTCGATATATTAGGCAAATAGCTCAGGAAATGAGTGGCGAAGTAGTATATGGATTGGGTAGACAGCCTGCTGTTTTGCGAACATTCAGCCAAAGATTAAGCAGAGGCTTCAATGATGCTGTAAATGGATTCAATGATAATGGGTGGTCTATACTGAACTGTGATGGCGCCGAGGATGTAATTATTGCTGTTAATTCAACCAAGAATTTGAGTAGCACTTCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGAATCCTCTGTGCAAAAGCTTCTATGTTGCTCCAAAACGTTCCTCCTGCTGTTTTGGTTCGCTTCCTAAGGGAGCACCGCTCAGAATGGGCAGATTTCAACGTCGATGCTTATTCTGCTGCATCATTGAAAGCTGGAAACTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAATCAAATAATCATGCCCCTTGGTCAGACAATTGAACATGAAGAGATGCTTGAGGTTATTAGGCTTGAAGGCCACTCTCTTGCTCCAGAAGATGCTTTTGTTTCAAGGGACATTCATCTCTTACAGATATGCAGTGGAACCGATGAGAATGCTGTTGGGACTTGTTCGGAGCTCATATTTGCTCCAATCGATGAAATGTTCCCAGATGATGCTCCATTGGTACCTTCTGGTTTCCGCATCATTCCGTTGGACTCAAAACCAGGTGATAAAAAGGATGCAGTGAATTCAAACCGAACACTGGATTTGACATCAGGTCTTGATGTGGGCGCAGCAACATCTCACGGCGGTGCAGATTCATCGAGTCAAAACACACGATCAGTGTTGACTATTGCCTTTCAGTTCCCTTTCGACAGCACCATGCAAGATAATGTTGTAATAATGGCACGTCAATATGTTCGTAGCGTGATTTCCTCTGTTCAGAGGGTTGCCATGGCTATTTCTCCGTCCGGTATAAACTCAGCTGTTGGAACAAAACTCTCTCCTGGCTCTCCAGAAGCAGTTACACTAGCTCATTGGATCTGCCAGAGTTATAGTTGCTATTTGGGGACAGATTTACTTAGATCAGATTCTCTAGTTGGCGACTTGATGCTAAAACAGCTGTGGCATCACCCGGACGCCATTCTATGTTGTTCACTGAAGTCGCAGCCAGTGTTCGTCTTTGCAAATCAAGCTGGCCTTGACATGTTGGAGACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAAATATTTGATGAGTCCGGGCGCAAGGCATTATGTTCAGATTTCGCCAAGTTAATGCAACAGGGTTTTGCTTATCTACCAGCCGGGATCTGCATGTCTACGATGGGACGGCATGTTTCATACGAGCAAGCCATTGCATGGAAAGTGTTAACACCAGAAGATAACTCTGTTCATTGCTTAGCCTTCTCTTTCATAAATTGGTCATTTGTATGA 2535 0.4442 MAMAVAHHRESSSSGGSIDKHLDSGKYVRYTSEQVEALERVYAECPKPSSMRRQQLIRECHILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTPSAAATTDASCDSVVTTPQNSKSDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRLSWFRECRNLEVFTMFPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGTGPNPAATAQFVRGEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLYESPKVVAQKMTIAALRYIRQIAQEMSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSILNCDGAEDVIIAVNSTKNLSSTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGNYAYPGMRPTRFTGNQIIMPLGQTIEHEEMLEVIRLEGHSLAPEDAFVSRDIHLLQICSGTDENAVGTCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDAVNSNRTLDLTSGLDVGAATSHGGADSSSQNTRSVLTIAFQFPFDSTMQDNVVIMARQYVRSVISSVQRVAMAISPSGINSAVGTKLSPGSPEAVTLAHWICQSYSCYLGTDLLRSDSLVGDLMLKQLWHHPDAILCCSLKSQPVFVFANQAGLDMLETTLVALQDITLDKIFDESGRKALCSDFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTPEDNSVHCLAFSFINWSFV 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00585 844 Coils Coil 91 122 - -
Vifa6g00585 844 Pfam START domain 166 373 IPR002913 GO:0008289
Vifa6g00585 844 SUPERFAMILY Homeodomain-like 25 88 IPR009057 -
Vifa6g00585 844 Gene3D - 200 382 IPR023393 -
Vifa6g00585 844 MobiDBLite consensus disorder prediction 1 22 - -
Vifa6g00585 844 ProSiteProfiles 'Homeobox' domain profile. 21 85 IPR001356 GO:0003677
Vifa6g00585 844 SUPERFAMILY Bet v1-like 165 377 - -
Vifa6g00585 844 CDD homeodomain 26 86 IPR001356 GO:0003677
Vifa6g00585 844 Pfam MEKHLA domain 700 843 IPR013978 -
Vifa6g00585 844 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Vifa6g00585 844 SMART START_1 165 375 IPR002913 GO:0008289
Vifa6g00585 844 CDD bZIP 78 117 - -
Vifa6g00585 844 FunFam Homeobox-leucine zipper protein REVOLUTA 26 81 - -
Vifa6g00585 844 CDD START_ArGLABRA2_like 160 376 - -
Vifa6g00585 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 22 844 IPR044830 GO:0003700
Vifa6g00585 844 SMART HOX_1 23 89 IPR001356 GO:0003677
Vifa6g00585 844 Gene3D - 19 92 - -
Vifa6g00585 844 Pfam Homeodomain 26 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00585 Vifa-Chr6 228304900 228309812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00585 1 844 Homeobox Transcription Factor Family AT5G60690 80.846 0.0 1415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa6g00585 START 8.3e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00585 K09338 - gmx:100804870 1543.48