Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00581 ATGTTCTCTTCATCTAAACTCGTGTTAGGACAGCTCACACCCGACACCATCATCAAGTCCACACAGATAAGGGCTTCCTCATCTCTTCATCATTCACTCCACCGCCACCTCCACCTCCACCGCCACCTCCACCGCCGTTCAAACTTCCAACCATTTCCTTCACTTCCGGATAATGCTAATATGAAGAACGGTTGGTTTTTTGACAACAACTTCAACGGTGTGTCGGATGAGATTCTTGGTGATGTTGTTGAGTTTTTTGATTTTCCACTTGATGATGATGATGTGGATACTGATGGTGTGGAGCAAGATTGGAATGATCAATTCAAGCACATTGAAGAGCCATCTCTTGGTGTTTTCTCAGTGCCATCGTTTGATTTGTGCGGCGAACCTCGAAATGAGAATCCCAATCTTGTGAACAATTTCTCTGCTTCTGAACTTTCTCATATTGACAGAAGAAATATTGTTAATTCGAGCTTCAAAGAACGACGAGGACTACTGCCAAAGAATGCTGGAGCTAAATATGGCAAAACTATTCCAATCCAAAACTTTCCATTCAAGGGAACAAATTTGCTCCAATGTCAAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGTAGTTATTCTTCAGTTGAGAACTCCAATTTTGAGTTACCAGTGATCCCGACAAAGCGTCCCCGCAGTAAACGTCAGCGTCTCTCAAGCTTCAACAAGCTCTTAATTCCATTCATAATTCCTTTCCGAAAACATCAATCCAAAACGCAGCGTGCTGGTAAGCCAAGGAAAAAGGATACCTCGCAGCGCATAGTCCAAAGAAAGCCAAGGAAAAAGGATATCTCGCAGCGCTCCGATGGTATTGAGACGAAGAAATCCTCATCCTCGTTACAGGAATCAGCTGCTCCCAGAAAATGTACGCATTGCGAGGTGACAGAGACGCCGCAATGGAGAGAGGGGCCTAAAGGTCCGAAGACCCTATGCAACGCGTGTGGAGTTCGATACAGGTCGGGCCGCCTCTTTCCTGAATACAGGCCTGCAGCTAGCCCAACCTTTGAAGCATCATTGCACTCAAATTCTCACAAGAAGGTTGTAGAAATCAGGAACAAGGTGAACAAAGAGAATGATAAAGGTTCTTCTATTTTGTATTTACAATCAAACCTTTCAGGAAATTTTCTAGGATAA 1176 0.4396 MFSSSKLVLGQLTPDTIIKSTQIRASSSLHHSLHRHLHLHRHLHRRSNFQPFPSLPDNANMKNGWFFDNNFNGVSDEILGDVVEFFDFPLDDDDVDTDGVEQDWNDQFKHIEEPSLGVFSVPSFDLCGEPRNENPNLVNNFSASELSHIDRRNIVNSSFKERRGLLPKNAGAKYGKTIPIQNFPFKGTNLLQCQTYSPVSVFESSSYSSVENSNFELPVIPTKRPRSKRQRLSSFNKLLIPFIIPFRKHQSKTQRAGKPRKKDTSQRIVQRKPRKKDISQRSDGIETKKSSSSLQESAAPRKCTHCEVTETPQWREGPKGPKTLCNACGVRYRSGRLFPEYRPAASPTFEASLHSNSHKKVVEIRNKVNKENDKGSSILYLQSNLSGNFLG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00581 391 ProSiteProfiles GATA-type zinc finger domain profile. 297 333 IPR000679 GO:0006355|GO:0043565
Vifa6g00581 391 Gene3D - 294 374 IPR013088 GO:0006355|GO:0008270
Vifa6g00581 391 PANTHER GATA TRANSCRIPTION FACTOR 96 372 - -
Vifa6g00581 391 SMART GATA_3 297 347 IPR000679 GO:0006355|GO:0043565
Vifa6g00581 391 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 299 360 - -
Vifa6g00581 391 ProSitePatterns GATA-type zinc finger domain. 303 328 IPR000679 GO:0006355|GO:0043565
Vifa6g00581 391 MobiDBLite consensus disorder prediction 257 284 - -
Vifa6g00581 391 CDD ZnF_GATA 302 349 IPR000679 GO:0006355|GO:0043565
Vifa6g00581 391 Pfam GATA zinc finger 303 336 IPR000679 GO:0006355|GO:0043565
Vifa6g00581 391 MobiDBLite consensus disorder prediction 249 302 - -
Vifa6g00581 391 FunFam GATA transcription factor 292 377 - -
Vifa6g00581 391 MobiDBLite consensus disorder prediction 285 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00581 Vifa-Chr6 226334740 226340473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00581 68 373 C2C2-Gata Transcription Factor Family AT1G08010 35.873 2.26e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa6g00581 GATA 6.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00581 - - tpra:123919943 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00581 6 226334740 226340473 Vifa6g00581 6 226334740 226340473 ECH