Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00579 ATGAAGGAAAGTGAAAAAGGGTATTTGGATCCACAGTTATGGCACGCTTGTGCTGGTGGAATGGTTCAGATACCTCAAGTGAATACCAAAGTTTTCTACTTTCCACAAGGTCATGCTGAACATGCCAACATAAACATTGATCTGAGGGTTTCGGTTCCGTCGTTGATTCTTTGTAAAGTTGTTGATGTTAGATTCATGGCTGACCCGGAAACTGATGAGGTTTTTGCTATAATGAAGCTTCTGCCTTTGAGAAACTCAGAGGTTGGTTACATTGAAGAAGGTGGTGGTGGGGGTGAGGGTTTGGAGAATTCTGAAAAGCCTGCATCTTTTGCAAAGACTTTGACTCAATCTGATGCAAACAATGGTGGAGGGTTTTCTGTTCCGAGATACTGTGCTGAGACGATTTTTCCGCGGCTGGATTACGCGGCTGAACCGCCTGTTCAGACGGTGGTGGCGAAGGATGTTCATGGTGAGCTTTGGAAGTTCAGGCATATATATCGAGGGACGCCTCGTAGGCACTTGCTTACGACTGGGTGGAGTAGTTTTGTGAACCAGAAAAAGCTTGTTGCTGGTGATTCTGTGGTGTTTCTGAGGTCTGAGAATGGTGAATTGTGTGTCGGAATCCGAAGGGCGAAAAAGGGAATTGGTAGTGGTTTTGATGGTTCATCTTGTGGTTGGACTTCAGGTTCAGGTTCAGGTTCTAACAGTGTTAATTGTGGAATTGGACCTTTTGGGGCGTTTTCGTTTTTCTTGAAAGAGGAGAATAAGACATTAAGAAATGGTTGTGTTGGTGTTGGTGGTGATGTGAGTGGAAGAGTGAAAGTGAGGCATGAAGATGTTATGGAAGCTGTGAAATTGGCTGCTAATAACCAACCATTTGAAGTTGTTTACTATCCGAGAGCAAGCACTCCTGAGTTCTGTGTTAAGGCTTCATCTGTTCGAGCTGCTATGAGGATTCAATGGTGTTCCGGGATGAGGTTTAAGATGCCTTTTGAAACCGAGGACTCTTCTAGGATTAGTTGGTTCATGGGAACCATCGCTTCTGTTCATGTCGTTGATCCTATTCGATGGCCTAATTCCCCGTGGCGCCTTCTTCAGGTTACATGGGACGAGCCGGATTTACTACAAAATGTGAAGTGTGTTAGTCCATGGTTGGTCGAACTGGTATCAAGCATACCAGTCCTTCATTTCACACCTTTCACTCCACCGAGGAAGAAGCTACGGTTTCCCCAAAACCTTGACTTCCCCCTCGGCATTCAATTTCCATCACCGACGTTTTCAGGCAACCAGCTCGGGCCAAATGGCCCTTTCTTCGGTTTATCTGATAATGCTCCTGCATGTATACAGGGAGCCAGGCAAGCTCAATTTGGAGGAATATCTCTTTCAGATCTCAACCTTAGCAACAATAAACTTCAGTTAGGGTTGTTTCCGACTAATGTTCAGCACGTTGACGTGCGTACTAGGATTTCGAACGGAAACAACATGATCAACAATGATAAGAACAAAGAAAGCTTATCATGCTTGTTGTCCATAGGGAAAAAGTCTGATAAGAGTTTGGAGAAATCTCAATCTGATGATGTTGTTGTTAAGAAACATCAGTTTTTTCTTTTCGGTCAACCGATACTCACCGAGCAACAAATTTCCAAAAACTGTTCTAAAGATGTAGTAGTAGATGAGAGTAAGAACAAAGAGAAGTGGTTTTTGGATGCATTGTCAGCAGGAAAAGGTTCTGATGCTGCTGAGTTTAGTTGGCAACTTGGGCTTGATATCGGTCACTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACACTTGATTTATCACTTCTTGGTTCTTATGAAGACCTCTACAAGAAACTGGCCAACATGTTTGATTTAGGAAAATCTGAGATGTTGACTCGCGTGTTCTACCGCGATGCAACAGGTGCTGTAAAGCAAACTGGTGAAGAGCCCTTCAGTGATTTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAACAAAAATGTTAGGGGGGGCTGGATTACAGGAACTCGAAATGGTGAACATGGATTGGATGCATCAAACAAAACAGGTCCTCTAAGCATAATTGCTTAA 2109 0.4358 MKESEKGYLDPQLWHACAGGMVQIPQVNTKVFYFPQGHAEHANINIDLRVSVPSLILCKVVDVRFMADPETDEVFAIMKLLPLRNSEVGYIEEGGGGGEGLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGSGFDGSSCGWTSGSGSGSNSVNCGIGPFGAFSFFLKEENKTLRNGCVGVGGDVSGRVKVRHEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVHVVDPIRWPNSPWRLLQVTWDEPDLLQNVKCVSPWLVELVSSIPVLHFTPFTPPRKKLRFPQNLDFPLGIQFPSPTFSGNQLGPNGPFFGLSDNAPACIQGARQAQFGGISLSDLNLSNNKLQLGLFPTNVQHVDVRTRISNGNNMINNDKNKESLSCLLSIGKKSDKSLEKSQSDDVVVKKHQFFLFGQPILTEQQISKNCSKDVVVDESKNKEKWFLDALSAGKGSDAAEFSWQLGLDIGHCKVFLESEDVGRTLDLSLLGSYEDLYKKLANMFDLGKSEMLTRVFYRDATGAVKQTGEEPFSDFMKTAKRLTILTDSGNKNVRGGWITGTRNGEHGLDASNKTGPLSIIA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00579 702 CDD B3_DNA 109 210 IPR003340 GO:0003677
Vifa6g00579 702 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Vifa6g00579 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa6g00579 702 Gene3D - 590 674 - -
Vifa6g00579 702 FunFam Auxin response factor 321 394 - -
Vifa6g00579 702 Pfam Auxin response factor 283 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa6g00579 702 SUPERFAMILY DNA-binding pseudobarrel domain 104 211 IPR015300 -
Vifa6g00579 702 Gene3D - 108 212 IPR015300 -
Vifa6g00579 702 SMART B3_2 110 212 IPR003340 GO:0003677
Vifa6g00579 702 Gene3D - 321 394 - -
Vifa6g00579 702 FunFam Auxin response factor 108 212 - -
Vifa6g00579 702 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Vifa6g00579 702 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00579 Vifa-Chr6 225255941 225258809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00579 4 674 B3 DNA Binding Superfamily AT4G30080 54.899 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa6g00579 B3 2.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00579 - - gmx:100814686 1007.67