Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00573 ATGAAGTCACAGATCAAAATAGCTCTTGCTTTCGTTATTAGTTTGCTCTGGATTCAACACTCCTTTTGTGATGAAGCAGCTGATACATCTAGCCTAAACAAGTGGAAATGTAGATGTTCTTCTTTCGAAGGGAGCCAAAGCAACTCTCTTGCTAATTGTTCGAAGTCATGTCATTGCCATTCAGATGCTGCAGAGGGTTCTTCCATATGGACATGCATATGTGATCCCAATGGATTTCCCCAAGTCGCAGAAGATGGTCATAACGCTAAGTGTTTTCACGCTTGCAACTGCAGCTGGGGAACTGTCAGCACGTCATTAGGTTCAAAGAAACACATTTCCAGCAAGGTTGTCGTAATTGTCCTATTAATATGTGTTATATGCACAACCATTGCGTTGCTGACCACAGTTGTATGCTACGTCTACCGAAGGAAGCAATACCCTATTCAATCACCAATATTCTCAGTAGATAAGGAGACAAGTAGTGGTAGTACCGCCAACCTAATCAGTCATCGGACAGGAACTTCTTCAGTACCAGAAACAACGTTTTTCGTGAATTCTCCTATTTGTCATATCACGGGTTGCTTTTCAAAACCCTCTTTTTTGTTTGGGAGTCAAAAAGAAACTTTTCATGGAAATATTATTCAATTTTCGTTTGGTGAACTGGAAAGTGCCACTGATAACTTTTCAGCTACCAACCTTATTGGAGTGGGCGGAAGTAGTTATGTATATCGTGGTCGGATGAGAGATGGTAACATTGTGGCAGTTAAGCGGCTAAAAGATCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAATTAATATCTAGACTTCACCATTGTCATTTGGTGCCGTTGCTTGGATACTGCTTAGAATCGAAAGGAAAACACATGCAGAGGTTACTAGTATTTGAGTACTTGATTAATGGAAGTTTGAGGGACTGGTTAGACGGAGTTTCTGGAAAATACTTGGATTGGACTACTCGTGTTACGATTGCAATAGGAGCAGCGAGGGGATTGGAATATCTCCATGAAGCAGCTGCTCCAAAAATTCTTCATAGAGATGTGAAATCAACCAACATTCTTCTCGATGAAAAATGGCAAGCAAAAATAACCGATCTTGGTATGGCGAAAAACTTGAGATCTGATGACCTACCAAGCGGTTCAGATTCTCCAGCAAGAATGCAGGGGACATTTGGCTATTTTGCACCCGAGTATGCTATTATTGGTAGAGCCTCACTTGAATCAGATGTCTTCAGTTTTGGCGTGGTACTTCTTGAGCTTATCAGTGGTCGACATCCTATTCATAAAACTACCGGCAAAGAAGAAAGCCTTGTTATATGGGCCTCTCCTCGTTTACAGGATAGTAGGCGAGTAATATCGGAGATAGTTGATCCACAATTGAAAGGAAACTTCCCAGAGGAAGAGGTGCATATAATGGCATATCTAGCAAAAGAATGCTTGCTGTTGGATCCCGACACTCGACCAACCATGAGCGAGGTTGTTCAAATTCTTTCTAGTATTGCACCGGGCAAATCAAGGAGGAGAAGAAACATTTCCACCAGCTTGTTTCAGGAACCAGAGGTTGTAGAAGCGAAAAGGCAAGCTCAATCCAGTGAATTTCCAACTCATAATTCATCGCCACTAGATACCGATTACAATTCATGTCTCGGAAACAAAAATAGAGAAGAAGATGCAGTTTCAGCTGAGTATATGGAAAGTTTGATTCTCTTGGCATCAAAATCTAATAGCTCGGATTCATCAGAAGAGGAAATGGTAGACATAACCGAGCCTCGGTTCGAATCATTTTGCATGACAAATGGCACTGTCACTTGA 1842 0.4164 MKSQIKIALAFVISLLWIQHSFCDEAADTSSLNKWKCRCSSFEGSQSNSLANCSKSCHCHSDAAEGSSIWTCICDPNGFPQVAEDGHNAKCFHACNCSWGTVSTSLGSKKHISSKVVVIVLLICVICTTIALLTTVVCYVYRRKQYPIQSPIFSVDKETSSGSTANLISHRTGTSSVPETTFFVNSPICHITGCFSKPSFLFGSQKETFHGNIIQFSFGELESATDNFSATNLIGVGGSSYVYRGRMRDGNIVAVKRLKDQGGPEADSAFFKEIELISRLHHCHLVPLLGYCLESKGKHMQRLLVFEYLINGSLRDWLDGVSGKYLDWTTRVTIAIGAARGLEYLHEAAAPKILHRDVKSTNILLDEKWQAKITDLGMAKNLRSDDLPSGSDSPARMQGTFGYFAPEYAIIGRASLESDVFSFGVVLLELISGRHPIHKTTGKEESLVIWASPRLQDSRRVISEIVDPQLKGNFPEEEVHIMAYLAKECLLLDPDTRPTMSEVVQILSSIAPGKSRRRRNISTSLFQEPEVVEAKRQAQSSEFPTHNSSPLDTDYNSCLGNKNREEDAVSAEYMESLILLASKSNSSDSSEEEMVDITEPRFESFCMTNGTVT 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00573 613 MobiDBLite consensus disorder prediction 538 558 - -
Vifa6g00573 613 PANTHER OS01G0750732 PROTEIN 29 526 - -
Vifa6g00573 613 MobiDBLite consensus disorder prediction 530 561 - -
Vifa6g00573 613 SMART serkin_6 228 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00573 613 Pfam Protein kinase domain 231 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00573 613 Gene3D Transferase(Phosphotransferase) domain 1 309 530 - -
Vifa6g00573 613 FunFam receptor-like serine/threonine-protein kinase NCRK 202 308 - -
Vifa6g00573 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672|GO:0006468
Vifa6g00573 613 SUPERFAMILY Protein kinase-like (PK-like) 209 507 IPR011009 -
Vifa6g00573 613 CDD STKc_IRAK 234 510 - -
Vifa6g00573 613 FunFam receptor-like serine/threonine-protein kinase NCRK 309 519 - -
Vifa6g00573 613 ProSiteProfiles Protein kinase domain profile. 228 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00573 613 Gene3D Phosphorylase Kinase; domain 1 202 308 - -
Vifa6g00573 613 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00573 Vifa-Chr6 223595803 223599371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00573 1 609 Receptor kinase-like Gene Family AT2G28250 49.837 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vifa6g00573 Pkinase 4.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00573 - - gmx:100817870 967.992