Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00572 ATGAAGTCACAGATCAAAATAGCTCTTGCTTTCGTTATTAGTTTGCTCTGGATTCAACACTCCTTTTGTGATGAAGCAGCTGATACATCTAGCCTAAACAAGTGGAAATGTAGATGTTCTTCTTTCGAAGGGAGCCAAAGCAACTCTCTTGCTAATTGTTCGAAGTCATGTCATTGCCATTCAGAGGGTTCTTCCATATGGACATGCATATGTGATCCCAATGGATTTCCCCAAGTCGCAGAAGATGGTCATAACGCTAAGTGTTTTCACGCTTGCAACTGCAGCTGGGGAACTGTCAGCACGTCATTAGGTTCAAAGAAACACATTTCCAGCAAGGTTGTCGTAATTGTCCTATTAATATGTGTTATATGCACAACCATTGCGTTGCTGACCACAGTTGTATGCTACGTCTACCGAAGGAAGCAATACCCTATTCAATCACCAATATTCTCAGTAGATAAGGAGACAAGTAGTGGTAGTACCGCCAACCTAATCAGTCATCGGACAGGAACTTCTTCAGTACCAGAAACAACGTTTTTCGTGAATTCTCCTATTTGTCATATCACGGGTTGCTTTTCAAAACCCTCTTTTTTGTTTGGGAGTCAAAAAGAAACTTTTCATGGAAATATTATTCAATTTTCGTTTGGTGAACTGGAAAGTGCCACTGATAACTTTTCAGCTACCAACCTTATTGGAGTGGGCGGAAGTAGTTATGTATATCGTGGTCGGATGAGAGATGGTAACATTGTGGCAGTTAAGCGGCTAAAAGATCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAATTAATATCTAGACTTCACCATTGTCATTTGGTGCCGTTGCTTGGATACTGCTTAGAATCGAAAGGAAAACACATGCAGAGGTTACTAGTATTTGAGTACTTGATTAATGGAAGTTTGAGGGACTGGTTAGACGGAGTTTCTGGAAAATACTTGGATTGGACTACTCGTGTTACGATTGCAATAGGAGCAGCGAGGGGATTGGAATATCTCCATGAAGCAGCTGCTCCAAAAATTCTTCATAGAGATGTGAAATCAACCAACATTCTTCTCGATGAAAAATGGCAAGCAAAAATAACCGATCTTGGTATGGCGAAAAACTTGAGATCTGATGACCTACCAAGCGGTTCAGATTCTCCAGCAAGAATGCAGGGGACATTTGGCTATTTTGCACCCGAGTATGCTATTATTGGTAGAGCCTCACTTGAATCAGATGTCTTCAGTTTTGGCGTGGTACTTCTTGAGCTTATCAGTGGTCGACATCCTATTCATAAAACTACCGGCAAAGAAGAAAGCCTTGTTATATGGGCCTCTCCTCGTTTACAGGATAGTAGGCGAGTAATATCGGAGATAGTTGATCCACAATTGAAAGGAAACTTCCCAGAGGAAGAGGTGCATATAATGGCATATCTAGCAAAAGAATGCTTGCTGTTGGATCCCGACACTCGACCAACCATGAGCGAGGTTGTTCAAATTCTTTCTAGTATTGCACCGGGCAAATCAAGGAGGAGAAGAAACATTTCCACCAGCTTGTTTCAGGAACCAGAGGTTGTAGAAGCGAAAAGGCAAGCTCAATCCAGTGAATTTCCAACTCATAATTCATCGCCACTAGATACCGATTACAATTCATGTCTCGGAAACAAAAATAGAGAAGAAGATGCAGTTTCAGCTGAGTATATGGAAAGTTTGATTCTCTTGGCATCAAAATCTAATAGCTCGGATTCATCAGAAGAGGAAATGGTAGACATAACCGAGCCTCGGTTCGAATCATTTTGCATGACAAATGGCACTGTCACTTGA 1833 0.4157 MKSQIKIALAFVISLLWIQHSFCDEAADTSSLNKWKCRCSSFEGSQSNSLANCSKSCHCHSEGSSIWTCICDPNGFPQVAEDGHNAKCFHACNCSWGTVSTSLGSKKHISSKVVVIVLLICVICTTIALLTTVVCYVYRRKQYPIQSPIFSVDKETSSGSTANLISHRTGTSSVPETTFFVNSPICHITGCFSKPSFLFGSQKETFHGNIIQFSFGELESATDNFSATNLIGVGGSSYVYRGRMRDGNIVAVKRLKDQGGPEADSAFFKEIELISRLHHCHLVPLLGYCLESKGKHMQRLLVFEYLINGSLRDWLDGVSGKYLDWTTRVTIAIGAARGLEYLHEAAAPKILHRDVKSTNILLDEKWQAKITDLGMAKNLRSDDLPSGSDSPARMQGTFGYFAPEYAIIGRASLESDVFSFGVVLLELISGRHPIHKTTGKEESLVIWASPRLQDSRRVISEIVDPQLKGNFPEEEVHIMAYLAKECLLLDPDTRPTMSEVVQILSSIAPGKSRRRRNISTSLFQEPEVVEAKRQAQSSEFPTHNSSPLDTDYNSCLGNKNREEDAVSAEYMESLILLASKSNSSDSSEEEMVDITEPRFESFCMTNGTVT 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00572 610 ProSiteProfiles Protein kinase domain profile. 225 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00572 610 MobiDBLite consensus disorder prediction 527 558 - -
Vifa6g00572 610 Gene3D Phosphorylase Kinase; domain 1 199 305 - -
Vifa6g00572 610 FunFam receptor-like serine/threonine-protein kinase NCRK 199 305 - -
Vifa6g00572 610 PANTHER OS01G0750732 PROTEIN 28 523 - -
Vifa6g00572 610 MobiDBLite consensus disorder prediction 535 555 - -
Vifa6g00572 610 Gene3D Transferase(Phosphotransferase) domain 1 306 527 - -
Vifa6g00572 610 FunFam receptor-like serine/threonine-protein kinase NCRK 306 516 - -
Vifa6g00572 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Vifa6g00572 610 CDD STKc_IRAK 231 507 - -
Vifa6g00572 610 SMART serkin_6 225 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00572 610 Pfam Protein kinase domain 228 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00572 610 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
Vifa6g00572 610 SUPERFAMILY Protein kinase-like (PK-like) 206 504 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00572 Vifa-Chr6 223595803 223599371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00572 1 606 Receptor kinase-like Gene Family AT2G28250 49.918 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vifa6g00572 Pkinase 4.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00572 - - gmx:100817870 960.288