Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00565 ATGAGGCCTGAACAATTGCATGTTGCACAACAAATTAGGCGAGACAAACTAAGGATCCAGAATCAAGAGTTTCCTAACAACAACAGCAACATAGAAGAGTTATTATTATCATTACACCAACAACAACCACAACAAGGTTTCAACATGGATATTCATCATCAAGTAAGAAATTCCAACAACAACAACAATATGCTTGATGATGATGAAGGTGATGAAGTTGGTATTTATTCATCTGATCAAATGATGAACAGTTTTTCATCACCGTCGAATCCGTTACACAGAAGCCCCTTGGAGTATTATCAGGAGCTAGGTGAAGCGAGTAACAGTAACAATAATAATAGATTGAGTTATTATTATGCAAATGAAGCAAATCACAATGTTTTTTTGCCTTCTGAGCTTAACCATAACCATGGTGATATTTTCAAGTCTTCAAATTCTATTAGTCCTCAAAGTGCTTCTTTAATGCATCATGGTGTTTGGGGAGGTGTGAATAGTAGTCATAACGTGTTCCATGAAAACCAAGGTGATTTGTGGACAAGTAGAGGTGTTGTTACTCTCGACAACAACAACAACATGGGTTCTTTCTTTAATGATTGTAATAATCCACAAGGGTTATCTTTGTCACTTTCATCAAATTCTTCTTCACAATCTAAACCTTCACCTCCTGCTTCAACTTTTGAACAAGGATCTTTCTTAAACGTTGCGAAATCGATTCATCAAGCAGAACCAATGGGAATTTCTTCAAACACTAGCCCTACTACTACAACTACCGGTTTTAGGAACGTTGGTCCTCTTGGACCCTTTACTGGATACGCAACAATATTGAAAAGTTCAAGGTTTTTAAAACCTTGTCAAGAGTTGTTAGAGGAATGTTGTTGTAAATCTGGTGTAACTATTGCAAAATCATTCGACAATGTTCCAAAATGGGTTTCTCGAGATGTTAGTGTTAATGTTGAAGATCATGAAACTGGAAAAGGTAGTAGTAGTTCAGGTGGTTCAAAAGAGAAAGAGAATAGTGCTCTTGTTGTTGCTGATGGAGGAGGAGTTGGGAATAACTTTTGTCTTTCTTTTTCTTCTAGTTCTCGACCAGAGTGCCAAAAGAATAAGGCTCAACTACTGTTCATGCAAGAAGAGGTTATAAGAAGATACAAGCAATATCATCAACAAATGCAAATGGTGGTTTCATCATTTGAGTCAGTAGCAGGTCTAAGTTCAGCTACACCATACATTTCAATGGTTCTCAAGTCACTATCAAAACACTTCAGATGCCTTAAAAATGCTATCACAGATCAACTCAAGCATACATGTCAAGTATTGGGAGAGGATTTTTCAATACTACCAACCACCACATGTAGTACTAGTAGTACTAAAATTGACAGTAATAATATGACAAGGCTAAGGTTCATGAATAATAGCCTACACAAGAACACTAATATTGACTTTGTTGAACCTCAACAACATGTTTGGAGACCCCAGAGAGGCTTACCTGAACGCTCAGTGGCCATCCTTAAAGCTTGGTTGTTTGAGCATTTTCTTCATCCGTACCCTACAGATACAGATAAACACATGTTGGCGACACAAACAGGTCTATCAAGAAACCAGGTATCAAATTGGTTCATAAATGCCCGAGTTCGTGTATGGAAACCAATGGTTGAGGAAATACACATGCTTGAGTCAAAAGGCACAGCAGAAGCTCAGAATCAGAACAATAACAAAAACGAACCATGCAGAGTTGGAACACATGAAAGGAAATTTCAGTGTTTGGAAATGGGGTCATCATCTTCGGGCATTCACAATGTTGAAAAGGTAATTACAAATGAAGAGCAATGGAATAATAATATTCAAGAGAAGAGATCCAAAATGGAAAATGAGATTACACCAAACATGAATATGGGTTTTTTGCCTTATCAACATGGATCCGTGTCATTAACTTTGGGTCTTAGACATGGCGTTGAAAGTGTACAACAGCAACATTTGCAGCAGCAGGAGGTAGAGCTTAGACATCATCAATATGGAGGGCACATGATCCATGATTTTGTGGGTTGA 2046 0.3768 MRPEQLHVAQQIRRDKLRIQNQEFPNNNSNIEELLLSLHQQQPQQGFNMDIHHQVRNSNNNNNMLDDDEGDEVGIYSSDQMMNSFSSPSNPLHRSPLEYYQELGEASNSNNNNRLSYYYANEANHNVFLPSELNHNHGDIFKSSNSISPQSASLMHHGVWGGVNSSHNVFHENQGDLWTSRGVVTLDNNNNMGSFFNDCNNPQGLSLSLSSNSSSQSKPSPPASTFEQGSFLNVAKSIHQAEPMGISSNTSPTTTTTGFRNVGPLGPFTGYATILKSSRFLKPCQELLEECCCKSGVTIAKSFDNVPKWVSRDVSVNVEDHETGKGSSSSGGSKEKENSALVVADGGGVGNNFCLSFSSSSRPECQKNKAQLLFMQEEVIRRYKQYHQQMQMVVSSFESVAGLSSATPYISMVLKSLSKHFRCLKNAITDQLKHTCQVLGEDFSILPTTTCSTSSTKIDSNNMTRLRFMNNSLHKNTNIDFVEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKGTAEAQNQNNNKNEPCRVGTHERKFQCLEMGSSSSGIHNVEKVITNEEQWNNNIQEKRSKMENEITPNMNMGFLPYQHGSVSLTLGLRHGVESVQQQHLQQQEVELRHHQYGGHMIHDFVG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00565 681 SUPERFAMILY Homeodomain-like 491 555 IPR009057 -
Vifa6g00565 681 MobiDBLite consensus disorder prediction 317 337 - -
Vifa6g00565 681 MobiDBLite consensus disorder prediction 321 336 - -
Vifa6g00565 681 FunFam BEL1-like homeodomain protein 9 492 554 - -
Vifa6g00565 681 SMART HOX_1 489 553 IPR001356 GO:0003677
Vifa6g00565 681 Pfam Homeobox KN domain 506 545 IPR008422 GO:0003677|GO:0006355
Vifa6g00565 681 CDD homeodomain 489 550 IPR001356 GO:0003677
Vifa6g00565 681 Pfam Associated with HOX 274 429 IPR006563 -
Vifa6g00565 681 SMART prehox3 269 430 IPR006563 -
Vifa6g00565 681 MobiDBLite consensus disorder prediction 207 226 - -
Vifa6g00565 681 Gene3D - 492 554 - -
Vifa6g00565 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 146 570 - -
Vifa6g00565 681 ProSiteProfiles 'Homeobox' domain profile. 486 549 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00565 Vifa-Chr6 221620622 221626707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00565 253 559 Homeobox Transcription Factor Family AT5G02030 46.129 1.05e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa6g00565 POX 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00565 - - tpra:123919922 766.918