Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00561 ATGGGAAAAACTAGTTTTGTACTCATCTATAACAAAATCAAGATTCTTCTTTGGTTTATTGCATGGATATCCTTAAACTCATGCTATTCACAACAACCTTATGACATTTCCAATTGTTATTCAAATCAAACGTCACCAGGTTCAAGGTACACATGCAATTCAACACATGAAACATGCAAAACATTCTTGGTATACAGATCAAATCACAATTTCCAAACCATTTCACAAATCTCAAACCTCTTCAACAAAACCACTAATGAAGTTCTTCACATAAACAACCTCACATCTTCTTCTGAAATACTCAAACAAGGTAAAGAAGTTGTTATTCCTATTGAATGTACATGTTCTGGCCAATTCTATCAAGCCAAACTCACCTACAAAGTTCTTGAGAACACACAAACATTTTCAAATATTGCTTGTGAGGTTTTTGAAGGACTATTGAAATACTTCACACTTTCTAATGAAAACCAATCACAAGGTAACTATGAGCCTAAAGTTGGTGATGAACTTTATGTCCCTCTTAGATGTGCATGTCCACAAAATTTCTCTAGTATCAAAAGTGTAATAAAGTACTTTATCACATACCCTCTTATAGAAGGAGATAGTTTTGATAAATTGAAGAAGAAATTTGGTTTCTCACTTGAAGATTTCTTTGAAGCAAATCAATTACAAACCTATTCATCCGTTTTTCCTATGACAGTTGTTTTGATTCCATTGAGAAATGAAAATGGTCCAATCAAAATTCTTGATATTCCAGATTCTCCTTCTCCACCTGATTTTCTTCCAACAAATCCATCTGAGACACAGGGATCATCAACACAAGCATCAAATTTATATATCGCAGGACCTATTATAGGTTTTTTCTTGTTCATAACATTGGTTGCAAGTGGATTCTACATGAAGAAACTAAAACAAAGTGATGTTGCTATTGTTGATTCTTTCAATCCTACAAACTCAACCACTTTATGGTCACCAATAAGAACCTCTACAACTTCATGTTTATCTCCTGATTTTCTTGTTGGATTAAAGTATTGTTTGCATAATTACCATATAGAGGAGATAGAAAAAGCTACAAAGTTTTTTAGTGATGTGAACAAGATTGGTGAAGTTGTTTATAAGGGACTAATCAATGATATTGAGGTGATGATAAAGAGGTTGAGATTTGAAGAAACTAGTGAGGTAATTGATTTACATTCAAGAATCAATCATGTTAATATTGTGAATTTAATTGGTGTTTGTTATGGTGAGGGTAATTTAATTTCATGGTCTTATTTAGTTTTTGAGTTACCAAAAAATGGTTGCTTAAGGGATTGTTTGTTAGATCCATGCAAGGAGTTAAATTGGTATAGAAGAACACAAATAGTATTTGACATAGCAACATGTTTATACTATTTGCATTATTGTTCTTTTCCTTCTTATGCTCATATGAATGTGAATAGTAGAAATATATTTGTGACTGAAAAATGGAGAGGAAGATTGGCAGATGTTGGTGGTGTGTCCAACAATGTTTTGCATGGAAATGTTTCACAAAAGGTTGACATTTTTGCATTTGGTGTTGTGTTGCTTGAGTTGATATCAGGAAGGGAAAGGTGTGAGGGAAAATTGATTAAAGATTGTGTTGGATTTTTGATGGGGGAAGGTAGTGAAGGTGGTGGATGTTTTGAAGGATTGAGGAGTTTTGTGGATCCAAATTTGAATGATTATTCTCTTCCGGAGGCTCTTTGTTTGTGTTTCTTAGCTAAGGATTGTGTGAAAGATGATCCTATGCTTAGACCAACTATGGATGATATCATCAAGGTTCTTGCAAAAATGGTTTAG 1818 0.3333 MGKTSFVLIYNKIKILLWFIAWISLNSCYSQQPYDISNCYSNQTSPGSRYTCNSTHETCKTFLVYRSNHNFQTISQISNLFNKTTNEVLHINNLTSSSEILKQGKEVVIPIECTCSGQFYQAKLTYKVLENTQTFSNIACEVFEGLLKYFTLSNENQSQGNYEPKVGDELYVPLRCACPQNFSSIKSVIKYFITYPLIEGDSFDKLKKKFGFSLEDFFEANQLQTYSSVFPMTVVLIPLRNENGPIKILDIPDSPSPPDFLPTNPSETQGSSTQASNLYIAGPIIGFFLFITLVASGFYMKKLKQSDVAIVDSFNPTNSTTLWSPIRTSTTSCLSPDFLVGLKYCLHNYHIEEIEKATKFFSDVNKIGEVVYKGLINDIEVMIKRLRFEETSEVIDLHSRINHVNIVNLIGVCYGEGNLISWSYLVFELPKNGCLRDCLLDPCKELNWYRRTQIVFDIATCLYYLHYCSFPSYAHMNVNSRNIFVTEKWRGRLADVGGVSNNVLHGNVSQKVDIFAFGVVLLELISGRERCEGKLIKDCVGFLMGEGSEGGGCFEGLRSFVDPNLNDYSLPEALCLCFLAKDCVKDDPMLRPTMDDIIKVLAKMV 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00561 605 Pfam LysM domain 199 238 IPR018392 -
Vifa6g00561 605 Gene3D Phosphorylase Kinase; domain 1 341 428 - -
Vifa6g00561 605 Pfam Protein tyrosine and serine/threonine kinase 378 497 IPR001245 GO:0004672|GO:0006468
Vifa6g00561 605 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 18 604 - -
Vifa6g00561 605 ProSiteProfiles Protein kinase domain profile. 288 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00561 605 ProSiteProfiles LysM domain profile. 193 237 IPR018392 -
Vifa6g00561 605 SUPERFAMILY Protein kinase-like (PK-like) 343 601 IPR011009 -
Vifa6g00561 605 Gene3D Transferase(Phosphotransferase) domain 1 501 605 - -
Vifa6g00561 605 Gene3D Transferase(Phosphotransferase) domain 1 431 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00561 Vifa-Chr6 220485707 220487524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00561 16 605 Receptor kinase-like Gene Family AT2G23770 30.745 2.87e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa6g00561 PK_Tyr_Ser-Thr 4.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00561 - - lja:Lj1g3v4047410.1 772.696