Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00555 ATGTCTGATATTGAGGGGTCACCAGGAAGCTCCATGCATGGAGTTACAGGAAGAGAACAAACCTTCCTTTCATCGGTTGCTTCCCCAATGGTTCCAACTGACACCACTGCCAACTTTGCATTACCAGTTGATTCTGAGCACAAAGCCAAAGTTTTCAAACTCTTTTCATTAGCCAATCCACACATGAGAACCTTCCATTTATCATGGATATCTTTCTTCACTTGTTTCGTCTCCACTTTCGCAGCGGCACCACTAGTCCCTATCATCCGCGACAACCTTAACCTCACGAAAGCAGACGTTGGTAACGCTGGTGTTGCTTCCGTTTCAGGTAGTATTTTCTCAAGGCTAGCAATGGGTGCAGTTTGTGACCTATTAGGTCCACGTTACGGTTGTGCTTTTCTTATTATGTTAACTGCACCGACAGTGTTTTGTATGTCATTTGTTGAAGATGCTGCTGGTTACATAGCAGTTAGGTTTATGATTGGTTTTTCATTGGCAACATTTGTTTCATGTCAATATTGGATGAGTACAATGTTTAATAGTAAGATAATTGGTCTTGTGAATGGTACTGCTGCTGGTTGGGGTAATATGGGTGGTGGTGCCACTCAACTTATTATGCCTTTGGTTTATGAATTGATTAGAAGAGGTGGTGCTACTCCTTTTACTGCTTGGAGAATTGCCTTTTTTATCCCTGGTTGGTTGCATGTTATCATGGGTATTATGGTCTTAACATTAGGCCAAGATTTACCTGATGGTAACCTTGGTGCTTTACAGAAGAAGGGTAATGTTGCTAAAGACAAGTTCACAAGGGTGTTATGGTATGCTATAACAAATTATAGGACATGGATATTTGCCCTACTTTATGGTTACTCTATGGGAGTTGAGTTAACCACTGATAATGTTATTGCTGAGTATTTCTATGACAGGTTTAACCTAAATCTACACACAGCTGGTATCATTGCTGCATCTTTCGGAATGGCGAACCTAGTTGCTCGTCCTTTCGGCGGATATGCATCAGATCTTGCAGCGAGATTATTCGGCATGAGAGGAAGACTATGGACACTATGGATCCTCCAAACCCTCGGAGGAGTTTTCTGCATATGGTTAGGCCGAGCTAACACACTTCCAATTGCAGTGCTGTCCATGATTCTGTTCTCAGTAGGAGCACAAGCTGCATGTGGTGCAACATTTGGAATCATTCCTTTCATTTCAAGAAGATCTTTGGGTATTATATCAGGTTTAACAGGTGCAGGTGGAAACTTTGGTTCTGGATTAACACAGTTGATATTTTTTTCAAGCTCAAAATTCTCAACATCAACCGGTCTTTCTTTAATGGGTGTAATGATTGTAGCTTGCACACTTCCTGTGAGTCTTGTTCATTTTCCACAGTGGGGTGGGATGTTGTTTCCAGCGTCAAAAGAGATAAATGAAGAACACTATTACACTTCAGAATGGAACGAGGATGAAGTGCAGAAAGGGTTGCATCAACCAAGTCTTAGGTTTGCTGAGAATAGTCGTTCTGAGAGAGGAAAGCGTGTGGCTTCTGCAGCAACACCGCCAAATACAACTCCTAGCCACTAG 1581 0.4206 MSDIEGSPGSSMHGVTGREQTFLSSVASPMVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKADVGNAGVASVSGSIFSRLAMGAVCDLLGPRYGCAFLIMLTAPTVFCMSFVEDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRGGATPFTAWRIAFFIPGWLHVIMGIMVLTLGQDLPDGNLGALQKKGNVAKDKFTRVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLNLHTAGIIAASFGMANLVARPFGGYASDLAARLFGMRGRLWTLWILQTLGGVFCIWLGRANTLPIAVLSMILFSVGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSSSKFSTSTGLSLMGVMIVACTLPVSLVHFPQWGGMLFPASKEINEEHYYTSEWNEDEVQKGLHQPSLRFAENSRSERGKRVASAATPPNTTPSH 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00555 526 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Vifa6g00555 526 Gene3D MFS general substrate transporter like domains 264 463 IPR036259 -
Vifa6g00555 526 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 513 IPR044772 GO:0015112
Vifa6g00555 526 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Vifa6g00555 526 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Vifa6g00555 526 SUPERFAMILY MFS general substrate transporter 59 459 IPR036259 -
Vifa6g00555 526 FunFam Nitrate transporter 2.1 265 466 - -
Vifa6g00555 526 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Vifa6g00555 526 MobiDBLite consensus disorder prediction 502 526 - -
Vifa6g00555 526 FunFam High affinity nitrate transporter 57 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00555 Vifa-Chr6 218051095 218052766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00555 1 526 Inorganic Solute Cotransporters AT1G08090 78.450 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00555 K02575 - gmx:100807710 988.023