Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00550 ATGGTTTCTGACGCTAGCAAGAAGAAAGCTGCACAGAAGAAAGCCGCCGCCGCTGCTAAGCGAGGTGGAAAGGCCGCAGTCGCCGCAGCTTCTTCCAAAGCCGCTGATAAGGTCGCTGACAAAATTGCCGATATTCGGATATCGGATCGGACGTGTACCGGCGTTCTTTGCTCGCATCCTCTTTCCAGAGATATTCGGATAGAGTCTCTGTCTGTTACTTTTCATGGGCATGATCTCATAGTTGATTCTGAGTTGGAGCTGAATTATGGAAGACGGTATGGTTTACTTGGATTAAATGGATGTGGAAAGTCTACTCTTCTTACTGCAATAGGTTGCCGGGAACTTCCGATTCCAGAGCACATGGATATTCATCATCTTAGCAGGGAAATTGAAGCCTCTGACATGTCTGCTTTGGAAGCTGTCATTGCCTGTGATGAAGAAAGGTTGAAGTTGGAAAGGGAGGCTGAAATTCTGGCAGCTCAGGATGATGGTGGTGGTGAAGCCCTTGAACGTATTTATGAACGATTGGATGCCCTAGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATCTTGCATGGTCTTGGGTTTGACAAGAAGATGCAAGCAAAGAAGACTCGAGATTTTTCTGGAGGCTGGAGAATGAGAATTGCATTAGCACGAGCTTTGTTTATGAACCCTACTGTTCTTCTACTTGATGAACCTACTAATCATCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAAAGTTTGAAGAAGTTTGAACGTATTTTGGTTGTGATATCACATTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGTAAGAAGCTGAAGATGTACACTGGTAATTATGATCAATATGTTCAGACACGTGGGGATTTGGAAGAGAACCAGATGAAACAGTACAAGTGGGAACAGGAGCAGATTGCCAACATGAAGGAATATATTGCTCGGTTTGGTCATGGTTCAGCTAAACTAGCTCGCCAGGCTCAGAGTAAGGAAAAAACACTGGCTAAAATGGAACGTGGTGGACTTACAGAGAAGGTAGTTAGAGACCAAGTTTTAGTATTTCGCTTTACTGATGTAGGAAAACTCCCCCCTCCTGTTCTCCAGTTTTCTGAAGTTAGTTTTGGATACACTGAAGATAATCTCATCTACAAAAACATTGACTTTGGGGTTGACTTAGACTCTAGGGTTGCTCTTGTTGGACCAAATGGTGCCGGAAAGAGTACACTACTGAAGCTAATGACAGGTGATCTGTTTCCTAGTGACGGCATGGTCAAGCGTCACAATCATCTTCGAATTGCTCAGTATCATCAGCACTTGGCTGAAAAGTTAGACTTGGACATGCCTGCACTTCAGTTTATGATGAGTGAATATCCCGGAAATGAGGAGGAGAAGATGCGGGCAGCTATTGGGAGGTTTGGACTGACAGGTAAAGCCCAGGTGATGCCTATGAATCACTTGTCTGATGGGCAGAAGAGTAGAGTGATATTCGCGTGGTTAGCTTGGAGGCAGCCTCAGTTATTACTCTTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCTCTTGCTGAGGCTTTGAATGAGTGGGATGGTGGCTTGGTTCTTGTTAGCCACGATTTTAGGCTCATAAATCAGGTAGCCAAAGAGATATGGGTATGTGCTGACCAAAAAGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGAAGCACCTAAAGGCAAAGGCAGGGATATCTGACTGA 1776 0.4448 MVSDASKKKAAQKKAAAAAKRGGKAAVAAASSKAADKVADKIADIRISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIHHLSREIEASDMSALEAVIACDEERLKLEREAEILAAQDDGGGEALERIYERLDALDASTAEKRAAEILHGLGFDKKMQAKKTRDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKMYTGNYDQYVQTRGDLEENQMKQYKWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDQVLVFRFTDVGKLPPPVLQFSEVSFGYTEDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLFPSDGMVKRHNHLRIAQYHQHLAEKLDLDMPALQFMMSEYPGNEEEKMRAAIGRFGLTGKAQVMPMNHLSDGQKSRVIFAWLAWRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAKEIWVCADQKVTRWEGDIMDFKKHLKAKAGISD 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00550 591 Pfam ABC transporter 83 237 IPR003439 GO:0005524
Vifa6g00550 591 Gene3D - 65 329 IPR027417 -
Vifa6g00550 591 SMART AAA_5 401 567 IPR003593 GO:0016887
Vifa6g00550 591 SMART AAA_5 89 291 IPR003593 GO:0016887
Vifa6g00550 591 ProSitePatterns ABC transporters family signature. 209 223 IPR017871 GO:0005524|GO:0016887
Vifa6g00550 591 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 15 586 - -
Vifa6g00550 591 FunFam Abc transporter f family member 1 65 329 - -
Vifa6g00550 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 571 IPR027417 -
Vifa6g00550 591 Pfam ABC transporter 392 523 IPR003439 GO:0005524
Vifa6g00550 591 Gene3D - 341 589 IPR027417 -
Vifa6g00550 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 298 IPR027417 -
Vifa6g00550 591 CDD ABCF_EF-3 65 282 - -
Vifa6g00550 591 CDD ABCF_EF-3 376 568 - -
Vifa6g00550 591 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 591 IPR003439 GO:0005524
Vifa6g00550 591 Pfam ABC transporter 276 348 IPR032781 -
Vifa6g00550 591 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 305 IPR003439 GO:0005524
Vifa6g00550 591 FunFam ATP-binding cassette sub-family F member 3 336 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00550 Vifa-Chr6 215358995 215362484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00550 196 263 Calmodulin-binding Proteins AT2G36910 41.429 4.90e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00550 K06185 - gmx:100809491 1030.78