Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00549 ATGACAGAAATAAAAAAGGTTGTTGTCGATGGAGTGTTGAAGTACAAGAATAATGTCTTCAAAAAGGTTCAAAAGTGTTTATTGATGGAAAGAAATGACGATAAATCCAAGGATGTGAAAAAAGGTCATTTTGTTGTGATGGCTGAGGATGAAGAGGAAATAAAGAGATTTGTTGTGCCATTGAGATTTTTAACAAATCCAATGTTTGTGAGATTATTGGAACAAGCAGGTGAAAAATATGGATTTAAGGGAAATGGTGCATTAACTGTTCCTTGTAGACCAAATGAGTTTCAGATGTTGATGGTACAGGAAGGGAGGCCTAGGAACAAAATTTGA 336 0.3482 MTEIKKVVVDGVLKYKNNVFKKVQKCLLMERNDDKSKDVKKGHFVVMAEDEEEIKRFVVPLRFLTNPMFVRLLEQAGEKYGFKGNGALTVPCRPNEFQMLMVQEGRPRNKI 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00549 111 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 32 100 IPR003676 GO:0009733
Vifa6g00549 111 Pfam Auxin responsive protein 31 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00549 Vifa-Chr6 215347203 215347538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00549 38 109 Calmodulin-binding Proteins AT3G43120 41.096 1.30e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00549 - K14488 psat:127103629 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00549 6 215347203 215347538 Vifa6g00549 6 215347203 215347538 ECH
Vifa1g01278 1 206362669 206363079 Vifa6g00549 6 215347203 215347538 PCT