Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00528 ATGGGATTCTCCAAAACCTTTCTGTCTCTTTTCTTGTTCTTCATTTTATTTTCTTTATCTTATGCAACTTCTCGCATCACACATCAACAACGTTTTCCATCAACCACAAAATTTTCATCAAATCGACTAGCTGAACAACTTATAAGAAGCTTTAACTTATTCCCAAAGGATTCAGCTAATATACATGGTGAATACTCTATTCATGATTTCATCCCCGGAAAGATCGTAGAGAAGACGTTTTCGTTTCTCGCTAGTTCTAATGGAACTTCTGTTGAAGATCTTGGTCACCATGCTGGATACTATTCGCTTCCTCGTTCCAAATCTGCAAGAATGTTCTATTTTTTCTTTGAATCAAGAAATGGTGCTAAGGATGCACCAGTTGTGATATGGTTGACAGGAGGACCAGGTTGTTCCAGTGAACTAGCTTTGTTTTATGAGAATGGTCCTTTTAAAATCAACAATGATTTGTCTCTTTCATGGAATGATTATGGTTGGGACAAGGAATCAAATATTATTTTTGTTGATCAACCCATTGGGACAGGTTTTAGCTACAGTTCTGATGAAAATGATATTCCTACGGATGGAAGTGGTGTTAGCAATGATTTGTACGCTTTCTTGCAGGCATTTTACAAGGAACACCCTGAATTGGTTAAGAATGAATTTTATATTACTGGAGAATCATATGCTGGACACTATATTCCAGGTCTTGCTTCCCGAGTTCACAAAGGAAACAAAAACAAAGAAGGAATTCCTATAAACTTCAAGGGTTTTGCTATTGGTAATGGGTTGACCAACCCAGGAATTCAGTACCAAGCATACACTCAGTTTGCAGTTGATAACAAATTGATCACAAAGGAAGATCAAGCTGATATCAACAAGTTGGTTCCAGATTGTGTAGATGCCACCAAAACATGCGAGAGTGAAGGTGGAGAAAGTTGCGAAACAGCCTTACAACAATGTCAACAGATATTTACTAATATCTTGGACATTGCTGGCAACATTAACTACTATGACATCACAAAGAAATGTGAAGGACAATTGTGTTATGATTTCTCAAATTTGGAGACATTTTTAAATGAGAAGACAGTTAGGGATGCGTTAGGAGTTGGGAACATAGAGTTTGTTTCATGCAGCAGTGCAGTGCATAATGCTTTGGTTCAAGATTGGATGTTAAACTATGAAAAAGATATTCCAACACTTCTTGAGGATGGAATCAAAGTTCTTATATATGCCGGAGAATTTGATCTTATTTGCAATTGGCTTGGGAATTCACAATGGGTTCACGCGATGAAGTGGTCAGGTCAAGAACAATTTGGGGCCTCCAAAACAGTTCCTTTTTTGGTTGATGGTAAAAACGCGGGACTGTTGAATAGCTATGGACCTCTCTCTTTTCTAAAGGTGAATGGTGCTGGACATATGGTTCCTATGGATCAGCCAAAAGCTGCACTTCAGATGTTGGTTAACTGGATTGAAGGGAACCTGAACCAGACAAAAATTTAA 1500 0.3793 MGFSKTFLSLFLFFILFSLSYATSRITHQQRFPSTTKFSSNRLAEQLIRSFNLFPKDSANIHGEYSIHDFIPGKIVEKTFSFLASSNGTSVEDLGHHAGYYSLPRSKSARMFYFFFESRNGAKDAPVVIWLTGGPGCSSELALFYENGPFKINNDLSLSWNDYGWDKESNIIFVDQPIGTGFSYSSDENDIPTDGSGVSNDLYAFLQAFYKEHPELVKNEFYITGESYAGHYIPGLASRVHKGNKNKEGIPINFKGFAIGNGLTNPGIQYQAYTQFAVDNKLITKEDQADINKLVPDCVDATKTCESEGGESCETALQQCQQIFTNILDIAGNINYYDITKKCEGQLCYDFSNLETFLNEKTVRDALGVGNIEFVSCSSAVHNALVQDWMLNYEKDIPTLLEDGIKVLIYAGEFDLICNWLGNSQWVHAMKWSGQEQFGASKTVPFLVDGKNAGLLNSYGPLSFLKVNGAGHMVPMDQPKAALQMLVNWIEGNLNQTKI 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00528 499 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 90 479 IPR001563 GO:0004185|GO:0006508
Vifa6g00528 499 ProSitePatterns Serine carboxypeptidases, serine active site. 223 230 IPR018202 GO:0004185
Vifa6g00528 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Vifa6g00528 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Vifa6g00528 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Vifa6g00528 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 209 234 IPR001563 GO:0004185|GO:0006508
Vifa6g00528 499 Gene3D alpha/beta hydrolase 75 498 IPR029058 -
Vifa6g00528 499 ProSitePatterns Serine carboxypeptidases, histidine active site. 462 479 IPR033124 GO:0004185
Vifa6g00528 499 FunFam Carboxypeptidase 83 499 - -
Vifa6g00528 499 Pfam Serine carboxypeptidase 93 492 IPR001563 GO:0004185|GO:0006508
Vifa6g00528 499 SUPERFAMILY alpha/beta-Hydrolases 95 492 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00528 Vifa-Chr6 206304292 206306868 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00528 357 492 Calmodulin-binding Proteins AT2G22960 22.449 7.49e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00528 K16298 - zju:107409144 681.019