Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00525 ATGGGAAGAGCTCCATGTTGTGACAAAACAAGTGTGAAGAGAGGTCCATGGTCACCAGAAGAAGACTCGAAACTGAAAGACTACATAGAGAAACATGGCACTGGTGGGAATTGGATTTCTCTTCCTCATAAAGCTGGTTTGAAGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATCTTAGGCCAAACATTAAGCATGGAGATTTTTCAGATGAGGAAGATAGAATAATTTGCAGTCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCACAATTGCCAGGTAGGACAGACAATGATATCAAGAACTATTGGAACACAAAGTTGAAGAAAAAACTCATGGCTTTGCATCATCCTAGAAAACCTTCATTTCCACCTTCATCTTCTTTCTTAGACTACTTTACTCAAACTCCATCAACCTTCAATGATCTCCAAACCATTTCACATCCTTCAAACAACTATCCTAACACAAGTTTCAACCCTTTTTACCAAAACCAAGATTCCATGAATCCTCACATGCAATATAACAACTACCCTATTATCAAAGACAACAACAATATGCTTATGTTTGGAAGTGAAGGAAGTTGTACTTCATCTGATGGAAGTTGCAAGGAAATCAAGCAAGAAGAAATTGGCTATCATCATCATCATCATCACATGTCTAGTATTGGATTTGATGAGTTCAACAACAATAATAACTTTATGATAAGTTCTAACAATGAAAGTGTTATTGGTGGTGCAAATATGAACCAATATGAAGAAAAATCAAGTGGAGTTGGATATAGTTACAATAGTACTACTATTAGTCAAACTCAAGCATTAACTCCATTACTTGATTATGGTCTTGAAGATATTAAGCATTTGATTAGTAGCAACAACAACAACATCAAAGGTTTTAATGTTGATGAAATTCATAAGAATGAAGAGAATGGTATGTACTATTGCCATTACTAG 966 0.352 MGRAPCCDKTSVKRGPWSPEEDSKLKDYIEKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALHHPRKPSFPPSSSFLDYFTQTPSTFNDLQTISHPSNNYPNTSFNPFYQNQDSMNPHMQYNNYPIIKDNNNMLMFGSEGSCTSSDGSCKEIKQEEIGYHHHHHHMSSIGFDEFNNNNNFMISSNNESVIGGANMNQYEEKSSGVGYSYNSTTISQTQALTPLLDYGLEDIKHLISSNNNNIKGFNVDEIHKNEENGMYYCHY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00525 321 Gene3D - 7 68 - -
Vifa6g00525 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa6g00525 321 PANTHER OS09G0431300 PROTEIN 1 268 - -
Vifa6g00525 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa6g00525 321 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vifa6g00525 321 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vifa6g00525 321 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vifa6g00525 321 SMART sant 67 115 IPR001005 -
Vifa6g00525 321 SMART sant 13 64 IPR001005 -
Vifa6g00525 321 Gene3D - 69 132 - -
Vifa6g00525 321 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vifa6g00525 321 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g00525 321 CDD SANT 16 62 IPR001005 -
Vifa6g00525 321 FunFam Transcription factor RAX3 7 68 - -
Vifa6g00525 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00525 Vifa-Chr6 205600250 205601637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00525 1 119 MYB Transcription Factor Family AT5G57620 86.555 4.42e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g00525 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00525 K09422 - gmx:100779186 340.117