Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00523 ATGCGTGTTATTGATTTACATCTTGTGTTATTAGGGCTATGGAGTGGAAGTTTAAATTGTGAGCATGGACACAGAGAAGCCACTCCCTCCAAAACAATTGGGAGAATTGTTGGTACGAGGTCCCAACATGATGCAAGACTTCCTGATGACGAGGCTGGTGAGGTTCCAATTGCTTATGTTGTTCATTCACCCAATAGTTCACTAACTGGGGAAGAAGTTCAGAAGTTTATTGCTAACCAGGTTGCACCATTCAAAATATTGCAAAGGGTGACATTCATTAGCAATGTTCCTAAGACAGCTTCAGGCAAAATTTTGAGAAGAGAGCTTATTGCGAAAACACTGTCCAAAGTATAA 354 0.4068 MRVIDLHLVLLGLWSGSLNCEHGHREATPSKTIGRIVGTRSQHDARLPDDEAGEVPIAYVVHSPNSSLTGEEVQKFIANQVAPFKILQRVTFISNVPKTASGKILRRELIAKTLSKV 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00523 117 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 46 111 - -
Vifa6g00523 117 Gene3D - 36 115 IPR045851 -
Vifa6g00523 117 Pfam AMP-binding enzyme C-terminal domain 48 103 IPR025110 -
Vifa6g00523 117 SUPERFAMILY Acetyl-CoA synthetase-like 47 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00523 Vifa-Chr6 205448549 205449369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00523 47 117 Monolignol Biosynthesis Gene Families AT4G05160 67.606 2.54e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00523 K01904 - gmx:100808944 116.701