Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00519 ATGGATACCAAAGTGGCGAGGTTCAACGGAACTAAACGGGTCATTGGGACGAAAACATGCATCTTTTGGCTCAATGGAAGATGCAACAGAGATCGTTGTAGGTTTTTGCACGGTGAACCACCATCATACGCATCAACTCATTCTTGGAATTATAATGAAATGAAGGGACGTTTCTCTTCAACACCGTATCATAATTCGAATAAGGGCCTTCCCATACATAATGCCAACACTCTTTTAAATAAAAAGATTGGAGATGACAAGTTGCCTCCCAAATGTAATTCTAAGACTGTCTTTATTAGGAAGACCGCGGAATACAAGTTGCCTCCCAAACATGCTACTATTGGAGATGACAGAGAAAAGACACAAGTTGCTATGGTTTCTCCAAAGCATATCTGCAAATATTGGATGAATGGCGATTGTGTTCACGGTGAACAGTGCCGGAATTTACATTCATGGTCTTATGGTGATGGCTTTGCCACATTAGCAAAGCTTCAAGGACACACGAAGCTTGTCACTGGAATTGCGCTTCCACATGGATCAAACAAACTTTATTCTGGCAGCACTGATGGAGCACTTCGAACATGGGACTGTCATACTGGTCAATGTACTAATTTGATGAATCTTGGTGCGGAAGCTACCTCTTTGATCAGTGAGGGTCCGTGGATTTTTGTTGGTCTGCCTAACACTATCAAGGCGTGGAATATGCAGACTGCTTCACATTTAACTCTTGGTGGACCTAAGGGACGAGTACTTGCCATGATTGTTGGCAATGATACACTCTTAGCTGGAGCAGAGGATGGTGTAATTTCTGCATGGAGAGGCAGCTCTAAATCCAATTCCCCTTTTGAACTGGTTGCATCGCTATGTGGTCACACTAAATCTGTTGTTTGCCTGGCTGTTGGATGTAACAAGATGTTGTACTCAGGATCCAAGGATCAAAGCATTAAGGTTTGGGATCTAGATACATTTGAGTGTAAAATGACACTCAATGCACATACAGACGAAGTCACGTCCCTCATTTGTTGGGACAATTTCTTGTTATCTGGTTCATCAGATTCCACTATCAAGGTCTGGTATAAAACCGTCCAGGAAACATTGGAAGTTGCATATTCACACAATGTAGAAAATGGCGTTGTTGCACTCTCTGGGATGACTGATCCAGAAAATAAGCCTATATTGTTCTGCTCTACTAGTAACAATTCAGTTCGCCTCTATGAACTGCCATCATTTTCCGAGAGGGGTAGATTGTTCGCTAAGCAAGAAGTTGGATTAATTGATACAGCTCCGGGTGGACTCTTCTTCACCGGAGACAGAACTGGTTTGCTGACTGTCTGGAAATGGTTGGAAGAGCCCAAGGTTGCAGCATCCTCTTGA 1374 0.4294 MDTKVARFNGTKRVIGTKTCIFWLNGRCNRDRCRFLHGEPPSYASTHSWNYNEMKGRFSSTPYHNSNKGLPIHNANTLLNKKIGDDKLPPKCNSKTVFIRKTAEYKLPPKHATIGDDREKTQVAMVSPKHICKYWMNGDCVHGEQCRNLHSWSYGDGFATLAKLQGHTKLVTGIALPHGSNKLYSGSTDGALRTWDCHTGQCTNLMNLGAEATSLISEGPWIFVGLPNTIKAWNMQTASHLTLGGPKGRVLAMIVGNDTLLAGAEDGVISAWRGSSKSNSPFELVASLCGHTKSVVCLAVGCNKMLYSGSKDQSIKVWDLDTFECKMTLNAHTDEVTSLICWDNFLLSGSSDSTIKVWYKTVQETLEVAYSHNVENGVVALSGMTDPENKPILFCSTSNNSVRLYELPSFSERGRLFAKQEVGLIDTAPGGLFFTGDRTGLLTVWKWLEEPKVAASS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00519 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 205 IPR001680 GO:0005515
Vifa6g00519 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 322 - -
Vifa6g00519 457 Gene3D - 140 279 IPR015943 GO:0005515
Vifa6g00519 457 ProSitePatterns Trp-Asp (WD) repeats signature. 306 320 IPR019775 -
Vifa6g00519 457 SUPERFAMILY WD40 repeat-like 140 446 IPR036322 GO:0005515
Vifa6g00519 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 358 IPR001680 GO:0005515
Vifa6g00519 457 PANTHER - 27 456 IPR044715 -
Vifa6g00519 457 ProSiteProfiles Zinc finger C3H1-type profile. 15 40 IPR000571 GO:0046872
Vifa6g00519 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 328 IPR001680 GO:0005515
Vifa6g00519 457 SMART c3hfinal6 127 152 IPR000571 GO:0046872
Vifa6g00519 457 SMART c3hfinal6 16 39 IPR000571 GO:0046872
Vifa6g00519 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 164 196 - -
Vifa6g00519 457 ProSiteProfiles Zinc finger C3H1-type profile. 131 153 IPR000571 GO:0046872
Vifa6g00519 457 SMART WD40_4 236 273 IPR001680 GO:0005515
Vifa6g00519 457 SMART WD40_4 281 319 IPR001680 GO:0005515
Vifa6g00519 457 SMART WD40_4 322 359 IPR001680 GO:0005515
Vifa6g00519 457 SMART WD40_4 409 446 IPR001680 GO:0005515
Vifa6g00519 457 SMART WD40_4 157 196 IPR001680 GO:0005515
Vifa6g00519 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 358 - -
Vifa6g00519 457 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
Vifa6g00519 457 Pfam WD domain, G-beta repeat 324 358 IPR001680 GO:0005515
Vifa6g00519 457 Pfam WD domain, G-beta repeat 283 319 IPR001680 GO:0005515
Vifa6g00519 457 Gene3D - 280 456 IPR015943 GO:0005515
Vifa6g00519 457 PRINTS G protein beta WD-40 repeat signature 183 197 IPR020472 -
Vifa6g00519 457 PRINTS G protein beta WD-40 repeat signature 306 320 IPR020472 -
Vifa6g00519 457 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00519 Vifa-Chr6 201902702 201904760 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00519 128 323 Eukaryotic Initiation Factors Gene Family AT2G46290 24.312 1.69e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g00519 WD40 0.00022 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00519 - - mtr:25500966 555.444