Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00518 ATGAATTCACATGTTACGTCACTAAAAGCTTACAAAACTCACCTTAAGTACGTGTATCCACTCACCGCCAAAAACAAAAACATTTTCCTCCTACTCACAACACCATCTTCTTCTCCTTCTCCTATACCAAAAACCCTTTTCAAATTCTTCTCCATTTCCACCACTAACCCACAATCTTTCACCGTCTCTTACCTCATCAACAACTGCGGCTTCTCCCCAGAAACCGCTTCCAAAGCTTTCCAAAATCTCACTCTCTCCAACTCCCAAAAACCCGATTCAGTTCTCGCCTTCTTCACTACCCACGGCTTCTCCATCTCCCAACTCCGCGACATCATCAGACGTGAACCCTGGCTACTCTCATGCGACCCCAACAAGGTTCTTTTACCAAAGTTTCAATTTTTACTTTCCAAAGGCGTTTCTTCCTCTGATATTGTTCGTATTGTTAATTCAAGCCCTAGACTTCTTAGAAGAAGCTTAGAGAATCATATAGTTCCTGCATATCAATGTGCAAAAGGGTTTCTTCAATCTGACAAAAAAACCATTGCTTGTGTTAAACGTTTTTGTTTTCTTTGTCAAAGTGGGCTGCCTGAAAATGTCAAATTGTTGCTTGATAATGGAGTTTCTCACTCTAATATTGCTAGGCTGTTTCATTGGTGGCCTAGTATAATTTGCTCATTTGATTTGTTGCACACTGTTGAAGAACTGAAAGAACTCGGTTTCGATGGCTCCACTTCCGCTTTTAGTAAGGCGTTTCTCGCGAAGAGAAGTGCCACTAAAGCGCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGCTCGTCTGATGAACAGATTCTTGAAACATTTAAGAAGCATCCTTTCTGTATGCTGGTATCGCCTCGGAAAATCAATGCAATCATGGATTTTTGGGTTTACCACCTAGGTTTGGATTCTTTGGACCTTGCCAGAGCTCCTGGAATTCTTCAATGCAGTCTCGAGAAGAGGATTATTCCTAGAGCTTCGGTTGTGCAGTTTCTTATCTCGAAAGGCTTGCGACGGAAGGATGCAGGCGTGTATACGCCGTTTGTTGTATCTGAGAAGTTGTTTGTGGAGAAGTTTGTGAAAGGCTTTGAGGAGCATTCTTCTGATCTCATAAAGCTTTATGAGGAAAAACTGAATCTTGCAGATGGTAGGAACGGCATTCAGCTGATAGTTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGAATTAGAGAATGGTTTATGCGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATGTGTATCCGCGTCTTCACTCGTGAAGGAAATGATCTGGTAGCCACTCAGAAGATCTCTCTTGCAGAAGCATTATCCGGCTGCACAGTGAATCTCACGACACTTGATGGTAGAAACTTGACTATAATCGTCAACAATGTCGTTCATCCTGAGTATGAGGAAGTTGTTCCAAGAGAAGGAATGCCACTGCCAAAGGATCCAACAAAGAAGGGAAACTTGAGGATAAAGTTCAACATCAAATTCCCACCTCGGCTCAATGCAGATCAGAAATCGGGATTGAAGAAAGTCTTGGCTGCATAA 1965 0.43 MNSHVTSLKAYKTHLKYVYPLTAKNKNIFLLLTTPSSSPSPIPKTLFKFFSISTTNPQSFTVSYLINNCGFSPETASKAFQNLTLSNSQKPDSVLAFFTTHGFSISQLRDIIRREPWLLSCDPNKVLLPKFQFLLSKGVSSSDIVRIVNSSPRLLRRSLENHIVPAYQCAKGFLQSDKKTIACVKRFCFLCQSGLPENVKLLLDNGVSHSNIARLFHWWPSIICSFDLLHTVEELKELGFDGSTSAFSKAFLAKRSATKAQWDEKVETFKKWGSSDEQILETFKKHPFCMLVSPRKINAIMDFWVYHLGLDSLDLARAPGILQCSLEKRIIPRASVVQFLISKGLRRKDAGVYTPFVVSEKLFVEKFVKGFEEHSSDLIKLYEEKLNLADGRNGIQLIVECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRELENGLCDVDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSRITDDNHWSCEQCTYANVRSATACQMCIRVFTREGNDLVATQKISLAEALSGCTVNLTTLDGRNLTIIVNNVVHPEYEEVVPREGMPLPKDPTKKGNLRIKFNIKFPPRLNADQKSGLKKVLAA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00518 654 SUPERFAMILY Ran binding protein zinc finger-like 534 557 IPR036443 -
Vifa6g00518 654 Gene3D - 560 637 - -
Vifa6g00518 654 FunFam DnaJ subfamily B member 13 559 638 - -
Vifa6g00518 654 PANTHER CGI-12 PROTEIN-RELATED 58 370 IPR003690 GO:0003690|GO:0006355
Vifa6g00518 654 ProSitePatterns Zinc finger RanBP2-type signature. 538 557 IPR001876 -
Vifa6g00518 654 MobiDBLite consensus disorder prediction 498 526 - -
Vifa6g00518 654 SMART mt_12 280 311 IPR003690 GO:0003690|GO:0006355
Vifa6g00518 654 SMART mt_12 213 241 IPR003690 GO:0003690|GO:0006355
Vifa6g00518 654 SMART mt_12 145 176 IPR003690 GO:0003690|GO:0006355
Vifa6g00518 654 SMART mt_12 109 140 IPR003690 GO:0003690|GO:0006355
Vifa6g00518 654 SMART mt_12 312 346 IPR003690 GO:0003690|GO:0006355
Vifa6g00518 654 FunFam Mitochondrial transcription termination factor-like 159 375 - -
Vifa6g00518 654 Gene3D Transcription termination factor 3, mitochondrial 61 195 IPR038538 -
Vifa6g00518 654 SMART zf_4 536 560 IPR001876 -
Vifa6g00518 654 Gene3D - 363 493 - -
Vifa6g00518 654 Pfam mTERF 95 240 IPR003690 GO:0003690|GO:0006355
Vifa6g00518 654 Pfam mTERF 196 348 IPR003690 GO:0003690|GO:0006355
Vifa6g00518 654 Gene3D - 532 559 - -
Vifa6g00518 654 SUPERFAMILY HSP40/DnaJ peptide-binding domain 560 646 IPR008971 GO:0006457|GO:0051082
Vifa6g00518 654 Pfam DnaJ C terminal domain 560 637 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00518 Vifa-Chr6 201131395 201135023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00518 398 557 ARIADNE family AT1G65430 65.000 4.47e-58 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa6g00518 mTERF 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00518 K15032 - gmx:102667698 371.318