Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00516 ATGGAGGAAAGAGAGAATATTCTTCATGAAGGTGTTGAAACTAGTATGAGTTGTTTGGAGACATCAACTTTGAGTTCAAGGAAGAAAAACAAGAAGGTGGAGAATAAAAGAAGGTTTAGTGATGAACAGATAAGGTCACTAGAATGTATATTTGAGTCAAAATCAAAGCTGGAGCCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAATCAAAGAGGATTGAACAAGAATATAGAAAACTTAAAGTTGAGTATGATAATTTAGCTTTGAAGTTTCAGTCTCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATATCATGATGGTGGAAGGGAAGGGAAGGAAAACAGCACAGAAGATGGTGGATCAGGAAATGGATATAGAAATTGTATGGCTGAAACAAAGGAAAGGATTGCGAATGAGGGATTGGAGGAGAGAATGGTAATTTATTCAGATGATCAAAATGAAAGAAGCTTAACAAGGACTGAAAAAGTTGATGACAGAAAATCAGGTTTTGAGAAATGA 609 0.3645 MEERENILHEGVETSMSCLETSTLSSRKKNKKVENKRRFSDEQIRSLECIFESKSKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKVEYDNLALKFQSLKEEKESLQSEVQKLSYMVETYHDGGREGKENSTEDGGSGNGYRNCMAETKERIANEGLEERMVIYSDDQNERSLTRTEKVDDRKSGFEK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00516 202 Coils Coil 82 130 - -
Vifa6g00516 202 SMART HOX_1 33 94 IPR001356 GO:0003677
Vifa6g00516 202 Pfam Homeobox associated leucine zipper 90 130 IPR003106 GO:0006355|GO:0043565
Vifa6g00516 202 SUPERFAMILY Homeodomain-like 14 90 IPR009057 -
Vifa6g00516 202 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Vifa6g00516 202 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Vifa6g00516 202 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Vifa6g00516 202 Pfam Homeodomain 36 88 IPR001356 GO:0003677
Vifa6g00516 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 161 IPR045224 GO:0003700
Vifa6g00516 202 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Vifa6g00516 202 FunFam Homeobox-leucine zipper protein ATHB-7 17 90 - -
Vifa6g00516 202 MobiDBLite consensus disorder prediction 177 202 - -
Vifa6g00516 202 MobiDBLite consensus disorder prediction 136 158 - -
Vifa6g00516 202 CDD homeodomain 36 91 IPR001356 GO:0003677
Vifa6g00516 202 Gene3D - 33 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00516 Vifa-Chr6 199782953 199783702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00516 8 123 Homeobox Transcription Factor Family AT2G46680 60.000 5.87e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa6g00516 Homeodomain 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00516 K09338 - gmx:100499926 244.202